RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 RPL11P62913 178 aaKnown RBP11.21□□□□□ -0.61
PTPRA-201ENST00000216877 TRAV13-1A0A0B4J241 112 aa11.21□□□□□ -0.62
PTPRA-201ENST00000216877 C1orf162Q8NEQ5 155 aaPredicted RBP11.21□□□□□ -0.62
PTPRA-201ENST00000216877 C2CD3Q4AC94 2353 aa11.21□□□□□ -0.62
PTPRA-201ENST00000216877 TEX22C9J3V5 150 aa11.2□□□□□ -0.62
PTPRA-201ENST00000216877 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.2□□□□□ -0.62
PTPRA-201ENST00000216877 H7C423 109 aa11.2□□□□□ -0.62
PTPRA-201ENST00000216877 UQCRQO14949 82 aa11.2□□□□□ -0.62
PTPRA-201ENST00000216877 COX6B1P14854 86 aa11.2□□□□□ -0.62
PTPRA-201ENST00000216877 ASCL5Q7RTU5 278 aa11.2□□□□□ -0.62
PTPRA-201ENST00000216877 AGPAT4-IT1Q9H0P7 198 aa11.2□□□□□ -0.62
PTPRA-201ENST00000216877 TACC2O95359 2948 aa11.2□□□□□ -0.62
PTPRA-201ENST00000216877 PAPPA-AS1Q5QFB9 102 aa11.19□□□□□ -0.62
PTPRA-201ENST00000216877 TEX36Q5VZQ5 186 aa11.19□□□□□ -0.62
PTPRA-201ENST00000216877 DSCR8Q96T75 97 aa11.19□□□□□ -0.62
PTPRA-201ENST00000216877 TMEM263Q8WUH6 116 aaKnown RBP11.18□□□□□ -0.62
PTPRA-201ENST00000216877 SLC50A1Q9BRV3 221 aa11.18□□□□□ -0.62
PTPRA-201ENST00000216877 TRACP01848 142 aa11.18□□□□□ -0.62
PTPRA-201ENST00000216877 TLN2Q9Y4G6 2542 aa11.18□□□□□ -0.62
PTPRA-201ENST00000216877 PLA2G2CQ5R387 149 aa11.18□□□□□ -0.62
PTPRA-201ENST00000216877 KIR2DL5BQ8NHK3 375 aa11.18□□□□□ -0.62
PTPRA-201ENST00000216877 METTL26Q96S19 204 aa11.18□□□□□ -0.62
PTPRA-201ENST00000216877 IGHV1-3A0A0C4DH29 117 aa11.17□□□□□ -0.62
PTPRA-201ENST00000216877 ICOSQ9Y6W8 199 aa11.17□□□□□ -0.62
PTPRA-201ENST00000216877 A0A087WWL8 130 aa11.17□□□□□ -0.62
PTPRA-201ENST00000216877 RHOHQ15669 191 aa11.17□□□□□ -0.62
PTPRA-201ENST00000216877 C4orf26Q17RF5 130 aa11.17□□□□□ -0.62
PTPRA-201ENST00000216877 PRSS33Q8NF86 280 aa11.17□□□□□ -0.62
PTPRA-201ENST00000216877 SRSF2Q01130 221 aaKnown RBP11.16□□□□□ -0.62
PTPRA-201ENST00000216877 TMEM30BQ3MIR4 351 aa11.16□□□□□ -0.62
PTPRA-201ENST00000216877 DEFB1P60022 68 aa11.16□□□□□ -0.62
PTPRA-201ENST00000216877 DAND5Q8N907 189 aa11.16□□□□□ -0.62
PTPRA-201ENST00000216877 DPH3P1Q9H4G8 78 aa11.16□□□□□ -0.62
PTPRA-201ENST00000216877 ZNF580Q9UK33 172 aa11.16□□□□□ -0.62
PTPRA-201ENST00000216877 IGHV1-8P0DP01 117 aa11.16□□□□□ -0.62
PTPRA-201ENST00000216877 RNF152Q8N8N0 203 aa11.16□□□□□ -0.62
PTPRA-201ENST00000216877 MRGPRG-AS1Q2M3A8 158 aa11.15□□□□□ -0.62
PTPRA-201ENST00000216877 PIMREGQ9BSJ6 248 aa11.15□□□□□ -0.62
PTPRA-201ENST00000216877 SORL1Q92673 2214 aa11.15□□□□□ -0.62
PTPRA-201ENST00000216877 CCL21O00585 134 aa11.15□□□□□ -0.62
PTPRA-201ENST00000216877 LRRC75A-AS1Q8N1F1 130 aa11.15□□□□□ -0.62
PTPRA-201ENST00000216877 LINC01546A6NGU7 62 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 IGF1P05019 195 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 NDPQ00604 133 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 ZNRF2Q8NHG8 242 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 C16orf92Q96LL3 132 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 C1orf43Q9BWL3 253 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 CNFNQ9BYD5 112 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 IGHG4P01861 327 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 CRYGDP07320 174 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 P0DMU3 169 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 FAM231AP0DMU4 169 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 FAM231CP0DMU5 169 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 LY6DQ14210 128 aa11.14□□□□□ -0.63
PTPRA-201ENST00000216877 SLC25A15Q9Y619 301 aa11.13□□□□□ -0.63
PTPRA-201ENST00000216877 SMAD5-AS1Q9Y6J3 95 aa11.13□□□□□ -0.63
PTPRA-201ENST00000216877 LINC01560Q8TB33 94 aa11.13□□□□□ -0.63
PTPRA-201ENST00000216877 EIF4EBP3O60516 100 aaPredicted RBP11.13□□□□□ -0.63
PTPRA-201ENST00000216877 RNASE4P34096 147 aaKnown RBP11.13□□□□□ -0.63
PTPRA-201ENST00000216877 RNASE13Q5GAN3 156 aaKnown RBP11.13□□□□□ -0.63
PTPRA-201ENST00000216877 SETD2Q9BYW2 2564 aaPredicted RBP11.13□□□□□ -0.63
PTPRA-201ENST00000216877 IGLV4-69A0A075B6H9 119 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 IGKV3D-7A0A0C4DH55 119 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 IGHV7-4-1A0A0J9YVY3 117 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 A0A0J9YXV3 536 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 EPG5Q9HCE0 2579 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 A0A1B0GX51 115 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 IGLV1-44P01699 117 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 LINC00526Q96FQ7 95 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 JPT2Q9H910 190 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 GNRH2O43555 120 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 ECSCRQ19T08 205 aa11.12□□□□□ -0.63
PTPRA-201ENST00000216877 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.11□□□□□ -0.63
PTPRA-201ENST00000216877 ZNF575Q86XF7 245 aa11.11□□□□□ -0.63
PTPRA-201ENST00000216877 ZNF625Q96I27 306 aaPredicted RBP11.11□□□□□ -0.63
PTPRA-201ENST00000216877 DMXL2Q8TDJ6 3036 aa11.11□□□□□ -0.63
PTPRA-201ENST00000216877 A0A0B4J2C4 111 aa11.11□□□□□ -0.63
PTPRA-201ENST00000216877 LYNX1G3V0Z9 82 aa11.11□□□□□ -0.63
PTPRA-201ENST00000216877 H3BT86 120 aa11.11□□□□□ -0.63
PTPRA-201ENST00000216877 LYNX1P0DP58 116 aa11.11□□□□□ -0.63
PTPRA-201ENST00000216877 BOD1L1Q8NFC6 3051 aa11.11□□□□□ -0.63
PTPRA-201ENST00000216877 USP9YO00507 2555 aaPredicted RBP11.1□□□□□ -0.63
PTPRA-201ENST00000216877 PKIGQ9Y2B9 76 aa11.1□□□□□ -0.63
PTPRA-201ENST00000216877 COX7CP15954 63 aa11.1□□□□□ -0.63
PTPRA-201ENST00000216877 SDIM1Q6ZPB5 146 aa11.1□□□□□ -0.63
PTPRA-201ENST00000216877 TMEM219Q86XT9 240 aa11.1□□□□□ -0.63
PTPRA-201ENST00000216877 MDS2Q8NDY4 140 aa11.1□□□□□ -0.63
PTPRA-201ENST00000216877 C10orf105Q8TEF2 133 aa11.1□□□□□ -0.63
PTPRA-201ENST00000216877 ABCA2Q9BZC7 2435 aa11.09□□□□□ -0.63
PTPRA-201ENST00000216877 I3L3M4 83 aa11.09□□□□□ -0.63
PTPRA-201ENST00000216877 SDHAF1A6NFY7 115 aa11.09□□□□□ -0.63
PTPRA-201ENST00000216877 LOXP28300 417 aaPredicted RBP11.09□□□□□ -0.63
PTPRA-201ENST00000216877 IGF2-ASQ6U949 168 aa11.09□□□□□ -0.63
PTPRA-201ENST00000216877 SONP18583 2426 aaKnown RBP11.09□□□□□ -0.63
PTPRA-201ENST00000216877 TRBV30A0A0K0K1B3 111 aa11.09□□□□□ -0.63
PTPRA-201ENST00000216877 TRBV7-7A0A0K0K1E9 115 aa11.09□□□□□ -0.63
PTPRA-201ENST00000216877 A8MZ25 164 aa11.09□□□□□ -0.63
PTPRA-201ENST00000216877 M0R1W7 72 aa11.09□□□□□ -0.63
PTPRA-201ENST00000216877 TSHBP01222 138 aa11.09□□□□□ -0.63
PTPRA-201ENST00000216877 LINC00574Q9H8X3 128 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 237.5 ms