RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 LINC00482Q8N8I6 264 aa12.74□□□□□ -0.37
PHGDH-234ENST00000642041 LOC102724200A0A096LPH7 203 aaPredicted RBP12.73□□□□□ -0.37
PHGDH-234ENST00000642041 IGKV3D-20A0A0C4DH25 116 aa12.73□□□□□ -0.37
PHGDH-234ENST00000642041 PPP1R17O96001 155 aa12.73□□□□□ -0.37
PHGDH-234ENST00000642041 ARMS2P0C7Q2 107 aa12.73□□□□□ -0.37
PHGDH-234ENST00000642041 SMIM6P0DI80 62 aa12.73□□□□□ -0.37
PHGDH-234ENST00000642041 RNASE4P34096 147 aaKnown RBP12.73□□□□□ -0.37
PHGDH-234ENST00000642041 CD300EQ496F6 205 aaPredicted RBP12.73□□□□□ -0.37
PHGDH-234ENST00000642041 TPPP3Q9BW30 176 aa12.73□□□□□ -0.37
PHGDH-234ENST00000642041 PLECQ15149 4684 aaKnown RBP12.72□□□□□ -0.37
PHGDH-234ENST00000642041 TRGV11A0A075B6L2 103 aa12.72□□□□□ -0.37
PHGDH-234ENST00000642041 GZMBP10144 247 aa12.72□□□□□ -0.37
PHGDH-234ENST00000642041 NTF3P20783 257 aa12.72□□□□□ -0.37
PHGDH-234ENST00000642041 SRIP30626 198 aa12.72□□□□□ -0.37
PHGDH-234ENST00000642041 DEFB131AP59861 70 aa12.72□□□□□ -0.37
PHGDH-234ENST00000642041 SPANXN1Q5VSR9 72 aa12.72□□□□□ -0.37
PHGDH-234ENST00000642041 FAM104BQ5XKR9 115 aa12.72□□□□□ -0.37
PHGDH-234ENST00000642041 CHCHD1Q96BP2 118 aaKnown RBP12.72□□□□□ -0.37
PHGDH-234ENST00000642041 ALKBH7Q9BT30 221 aaPredicted RBP12.72□□□□□ -0.37
PHGDH-234ENST00000642041 TMSB15BA0A087X1C1 80 aa12.71□□□□□ -0.37
PHGDH-234ENST00000642041 OR11H12B2RN74 326 aa12.71□□□□□ -0.37
PHGDH-234ENST00000642041 H3BMM0 161 aa12.71□□□□□ -0.37
PHGDH-234ENST00000642041 IGLV1-51P01701 117 aa12.71□□□□□ -0.37
PHGDH-234ENST00000642041 SLAQ13239 276 aa12.71□□□□□ -0.37
PHGDH-234ENST00000642041 LINC00467Q9BRT7 94 aa12.71□□□□□ -0.37
PHGDH-234ENST00000642041 F6UB75 175 aa12.7□□□□□ -0.38
PHGDH-234ENST00000642041 SAP30O75446 220 aa12.7□□□□□ -0.38
PHGDH-234ENST00000642041 PIK3CD-AS1Q5SR53 167 aa12.7□□□□□ -0.38
PHGDH-234ENST00000642041 ZFAND6Q6FIF0 208 aa12.7□□□□□ -0.38
PHGDH-234ENST00000642041 ORMDL3Q8N138 153 aa12.7□□□□□ -0.38
PHGDH-234ENST00000642041 TMEM256Q8N2U0 113 aa12.7□□□□□ -0.38
PHGDH-234ENST00000642041 RCHY1Q96PM5 261 aa12.7□□□□□ -0.38
PHGDH-234ENST00000642041 MAP6D1Q9H9H5 199 aa12.7□□□□□ -0.38
PHGDH-234ENST00000642041 ZNF256Q9Y2P7 627 aaPredicted RBP12.7□□□□□ -0.38
PHGDH-234ENST00000642041 PHLDA3Q9Y5J5 127 aa12.7□□□□□ -0.38
PHGDH-234ENST00000642041 ZNF324O75467 553 aaPredicted RBP12.69□□□□□ -0.38
PHGDH-234ENST00000642041 ZNF705DP0CH99 300 aaPredicted RBP12.69□□□□□ -0.38
PHGDH-234ENST00000642041 ZNF705BP0CI00 300 aaPredicted RBP12.69□□□□□ -0.38
PHGDH-234ENST00000642041 EDN2P20800 178 aa12.69□□□□□ -0.38
PHGDH-234ENST00000642041 SYT8Q8NBV8 401 aa12.69□□□□□ -0.38
PHGDH-234ENST00000642041 NDUFAF3Q9BU61 184 aa12.69□□□□□ -0.38
PHGDH-234ENST00000642041 SCRT2Q9NQ03 307 aa12.69□□□□□ -0.38
PHGDH-234ENST00000642041 TP53TG3Q9ULZ0 132 aa12.69□□□□□ -0.38
PHGDH-234ENST00000642041 IGHV1OR15-1A0A075B7D0 117 aa12.68□□□□□ -0.38
PHGDH-234ENST00000642041 ANXA2RQ3ZCQ2 193 aa12.68□□□□□ -0.38
PHGDH-234ENST00000642041 C9orf66Q5T8R8 295 aa12.68□□□□□ -0.38
PHGDH-234ENST00000642041 STHQ8IWL8 128 aa12.68□□□□□ -0.38
PHGDH-234ENST00000642041 C1QTNF4Q9BXJ3 329 aa12.68□□□□□ -0.38
PHGDH-234ENST00000642041 FRAS1Q86XX4 4008 aa12.67□□□□□ -0.38
PHGDH-234ENST00000642041 GDF5OSQ5U4N7 250 aa12.67□□□□□ -0.38
PHGDH-234ENST00000642041 C18orf32Q8TCD1 76 aa12.67□□□□□ -0.38
PHGDH-234ENST00000642041 PTH2Q96A98 100 aa12.67□□□□□ -0.38
PHGDH-234ENST00000642041 MRAP2Q96G30 205 aa12.67□□□□□ -0.38
PHGDH-234ENST00000642041 SAMD10Q9BYL1 202 aa12.67□□□□□ -0.38
PHGDH-234ENST00000642041 GRIFINA4D1Z8 144 aa12.66□□□□□ -0.38
PHGDH-234ENST00000642041 RBMY1BA6NDE4 496 aaKnown RBP12.66□□□□□ -0.38
PHGDH-234ENST00000642041 RBMY1EA6NEQ0 496 aaKnown RBP12.66□□□□□ -0.38
PHGDH-234ENST00000642041 HSBP1O75506 76 aa12.66□□□□□ -0.38
PHGDH-234ENST00000642041 RBMY1DP0C7P1 496 aaKnown RBP12.66□□□□□ -0.38
PHGDH-234ENST00000642041 MORN3Q6PF18 240 aaPredicted RBP12.66□□□□□ -0.38
PHGDH-234ENST00000642041 AMTNQ6UX39 209 aa12.66□□□□□ -0.38
PHGDH-234ENST00000642041 HIST1H2BLQ99880 126 aa12.66□□□□□ -0.38
PHGDH-234ENST00000642041 NAGKQ9UJ70 344 aa12.66□□□□□ -0.38
PHGDH-234ENST00000642041 FABP4P15090 132 aa12.65□□□□□ -0.38
PHGDH-234ENST00000642041 CKS2P33552 79 aa12.65□□□□□ -0.38
PHGDH-234ENST00000642041 KIAA1644Q3SXP7 199 aa12.65□□□□□ -0.38
PHGDH-234ENST00000642041 LINC00518Q8N0U6 118 aa12.65□□□□□ -0.38
PHGDH-234ENST00000642041 AP1S3Q96PC3 154 aa12.65□□□□□ -0.38
PHGDH-234ENST00000642041 C11orf21Q9P2W6 132 aa12.65□□□□□ -0.38
PHGDH-234ENST00000642041 TRAV12-3A0A0B4J271 114 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 K7EMI3 77 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 INSP01308 110 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 CD7P09564 240 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 FRMD6-AS1P0C7T7 363 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 LINC00614P0C842 121 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 SMIM17P0DL12 118 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 PRR9Q5T870 116 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 GFI1BQ5VTD9 330 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 DEFB125Q8N687 156 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 DPH3P1Q9H4G8 78 aa12.64□□□□□ -0.39
PHGDH-234ENST00000642041 SERF1AO75920 110 aa12.63□□□□□ -0.39
PHGDH-234ENST00000642041 NXPH4O95158 308 aa12.63□□□□□ -0.39
PHGDH-234ENST00000642041 G0S2P27469 103 aa12.63□□□□□ -0.39
PHGDH-234ENST00000642041 ZNF575Q86XF7 245 aa12.63□□□□□ -0.39
PHGDH-234ENST00000642041 OR10D4PQ8NGN7 298 aa12.63□□□□□ -0.39
PHGDH-234ENST00000642041 PRELID3AQ96N28 172 aa12.63□□□□□ -0.39
PHGDH-234ENST00000642041 SPXQ9BT56 116 aa12.63□□□□□ -0.39
PHGDH-234ENST00000642041 NXT2Q9NPJ8 142 aaKnown RBP12.63□□□□□ -0.39
PHGDH-234ENST00000642041 LINC01549A6NIU2 74 aa12.62□□□□□ -0.39
PHGDH-234ENST00000642041 PRSS47A8MTI9 375 aa12.62□□□□□ -0.39
PHGDH-234ENST00000642041 H3BVH4 76 aa12.62□□□□□ -0.39
PHGDH-234ENST00000642041 J3KRW8 73 aa12.62□□□□□ -0.39
PHGDH-234ENST00000642041 SPINK13Q1W4C9 94 aa12.62□□□□□ -0.39
PHGDH-234ENST00000642041 PRSS3P2Q8NHM4 247 aa12.62□□□□□ -0.39
PHGDH-234ENST00000642041 GSN-AS1Q9NRJ2 163 aa12.62□□□□□ -0.39
PHGDH-234ENST00000642041 M0R381 172 aa12.61□□□□□ -0.39
PHGDH-234ENST00000642041 FA2HQ7L5A8 372 aa12.61□□□□□ -0.39
PHGDH-234ENST00000642041 GTSCR1Q86UQ5 136 aa12.61□□□□□ -0.39
PHGDH-234ENST00000642041 NIT1Q86X76 327 aa12.61□□□□□ -0.39
PHGDH-234ENST00000642041 MAP1LC3AQ9H492 121 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms