RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SMIM20Q8N5G0 67 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 SREK1IP1Q8N9Q2 155 aaPredicted RBP-0.33□□□□□ -2.46
VPS35-212ENST00000640313 OR8J3Q8NGG0 315 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 OR51A4Q8NGJ6 313 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 OR5H6Q8NGV6 325 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 OTOSQ8NHW6 89 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 SMIM11BQ8TCY0 68 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 NEK7Q8TDX7 302 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 TMEM141Q96I45 108 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 AP1S3Q96PC3 154 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 BOLA2Q9H3K6 86 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 BET1LQ9NYM9 111 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 ARL2BPQ9Y2Y0 163 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 UFC1Q9Y3C8 167 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 FAM135BQ49AJ0 1406 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 CMYA5Q8N3K9 4069 aa-0.33□□□□□ -2.46
VPS35-212ENST00000640313 DNAH17Q9UFH2 4485 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 USP9YO00507 2555 aaPredicted RBP-0.34□□□□□ -2.46
VPS35-212ENST00000640313 NCAPD3P42695 1498 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 USF3Q68DE3 2245 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TRGV1A0A0A0MS02 117 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TRAV16A0A0A6YYK6 109 aaPredicted RBP-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TRAV13-1A0A0B4J241 112 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TRAV17A0A0B4J275 112 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TRBV7-6A0A0J9YX20 115 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 LOC107984640A0A0U1RRK4 108 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 LOC107986453A0A1B0GWG9 222 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TMEM210A6NLX4 147 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 C5orf58C9J3I9 102 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 F2Z2F3 143 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TECPR2O15040 1411 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 EDF1O60869 148 aaKnown RBP-0.34□□□□□ -2.46
VPS35-212ENST00000640313 ATG12O94817 140 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 IFNA1P01562 189 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 APOA2P02652 100 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 SLC25A5P05141 298 aaKnown RBP-0.34□□□□□ -2.46
VPS35-212ENST00000640313 CCL3L1P16619 93 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 ADCYAP1P18509 176 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 CRYGSP22914 178 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 S100A11P31949 105 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 SDC2P34741 201 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 RPL22P35268 128 aaKnown RBP-0.34□□□□□ -2.46
VPS35-212ENST00000640313 PPP1R2P41236 205 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 MT4P47944 62 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TAS2R41P59536 307 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 NPC2P61916 151 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 ARF6P62330 175 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 BASP1P80723 227 aaKnown RBP-0.34□□□□□ -2.46
VPS35-212ENST00000640313 SPAG11BQ08648 103 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 OR8B8Q15620 311 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 KRTAP6-2Q3LI66 62 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 BCORL1Q5H9F3 1711 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TMEM78Q5T7P6 136 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 IFT20Q8IY31 132 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TEX29Q8N6K0 151 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 OR4S1Q8NGB4 309 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 AP3S1Q92572 193 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 PPP1R14BQ96C90 147 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TRPM7Q96QT4 1865 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 PHB2Q99623 299 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 PBDC1Q9BVG4 233 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 CBLN4Q9NTU7 201 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 COA4Q9NYJ1 87 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 LAMTOR3Q9UHA4 124 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 TANC2Q9HCD6 1990 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 AFDNP55196 1824 aaKnown RBP-0.34□□□□□ -2.46
VPS35-212ENST00000640313 DNAH10Q8IVF4 4471 aa-0.34□□□□□ -2.46
VPS35-212ENST00000640313 WDR97A6NE52 1622 aa-0.35□□□□□ -2.46
VPS35-212ENST00000640313 CAMSAP2Q08AD1 1489 aa-0.35□□□□□ -2.46
VPS35-212ENST00000640313 TCOF1Q13428 1488 aaKnown RBP-0.35□□□□□ -2.46
VPS35-212ENST00000640313 CDK12Q9NYV4 1490 aaPredicted RBP-0.35□□□□□ -2.46
VPS35-212ENST00000640313 HTTP42858 3142 aa-0.35□□□□□ -2.46
VPS35-212ENST00000640313 DNAH5Q8TE73 4624 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 MAP2P11137 1827 aaKnown RBP-0.35□□□□□ -2.47
VPS35-212ENST00000640313 VIRMAQ69YN4 1812 aaKnown RBP-0.35□□□□□ -2.47
VPS35-212ENST00000640313 KIAA1549LQ6ZVL6 1849 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 HECTD1Q9ULT8 2610 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 TRBV7-1A0A0A6YYK4 115 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 IGHV1-24A0A0C4DH33 117 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 A0A1W2PRE2 83 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 CLPSL1A2RUU4 121 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 RBAKDNA6NC62 111 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 TMEM14DPA8MWL7 114 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 ZNF670-ZNF695F2Z2N8 137 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 M0QZK8 103 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 M0R3E3 92 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 UQCRQO14949 82 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 APODP05090 189 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 SLC25A6P12236 298 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 RPL7P18124 248 aaKnown RBP-0.35□□□□□ -2.47
VPS35-212ENST00000640313 SDC4P31431 198 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 CKS2P33552 79 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 POLR2HP52434 150 aaKnown RBP-0.35□□□□□ -2.47
VPS35-212ENST00000640313 POLR2JP52435 117 aaKnown RBP-0.35□□□□□ -2.47
VPS35-212ENST00000640313 REEP5Q00765 189 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 SSBP1Q04837 148 aaKnown RBP-0.35□□□□□ -2.47
VPS35-212ENST00000640313 HSD17B12Q53GQ0 312 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 FAM74A4Q5TZK3 123 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 Q5VV11 94 aa-0.35□□□□□ -2.47
VPS35-212ENST00000640313 DCUN1D2Q6PH85 259 aa-0.35□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms