RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 NHP2Q9NX24 153 aaKnown RBP9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 A6NDX4 124 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 SOCS3O14543 225 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 DAZ1Q9NQZ3 744 aaKnown RBP9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 TRAV12-2A0A075B6T6 113 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 IGHV4-59P01825 116 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 ZNF688P0C7X2 276 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 EMP1P54849 157 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 FAM74A4Q5TZK3 123 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 DPH3P1Q9H4G8 78 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 ACACBO00763 2458 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 ZFYVE26Q68DK2 2539 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 LINC01546A6NGU7 62 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 GTF2H5Q6ZYL4 71 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 ZMAT4Q9H898 229 aa9.75□□□□□ -0.85
CCDC88A-214ENST00000621814 SIVA1O15304 175 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 SMIM13P0DJ93 91 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 A0A087WX48 190 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 SAP30O75446 220 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 CD7P09564 240 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 FAM159AQ6UWV7 190 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 MRAP2Q96G30 205 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 CSTL1Q9H114 145 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 SPCS1Q9Y6A9 102 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 IGHV4-4A0A075B6R2 117 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 RNASE3P12724 160 aaKnown RBP9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 PSMG4Q5JS54 123 aa9.74□□□□□ -0.85
CCDC88A-214ENST00000621814 HTN1P15515 57 aa9.73□□□□□ -0.85
CCDC88A-214ENST00000621814 CHTOPQ9Y3Y2 248 aaKnown RBP9.73□□□□□ -0.85
CCDC88A-214ENST00000621814 IGSF10Q6WRI0 2623 aa9.73□□□□□ -0.85
CCDC88A-214ENST00000621814 SAMD5Q5TGI4 173 aa9.73□□□□□ -0.85
CCDC88A-214ENST00000621814 C2orf66Q6UXQ4 117 aa9.73□□□□□ -0.85
CCDC88A-214ENST00000621814 SMPXQ9UHP9 88 aa9.73□□□□□ -0.85
CCDC88A-214ENST00000621814 LENEPQ9Y5L5 61 aa9.73□□□□□ -0.85
CCDC88A-214ENST00000621814 DEFB112Q30KQ8 113 aa9.72□□□□□ -0.85
CCDC88A-214ENST00000621814 HIST1H4GQ99525 98 aa9.72□□□□□ -0.85
CCDC88A-214ENST00000621814 A0A1W2PPM0 123 aa9.71□□□□□ -0.85
CCDC88A-214ENST00000621814 CRIP2P52943 208 aaPredicted RBP9.71□□□□□ -0.85
CCDC88A-214ENST00000621814 ORMDL2Q53FV1 153 aa9.71□□□□□ -0.85
CCDC88A-214ENST00000621814 B4DSR2 109 aa9.71□□□□□ -0.85
CCDC88A-214ENST00000621814 H7C1H1 209 aa9.71□□□□□ -0.85
CCDC88A-214ENST00000621814 TGFAP01135 160 aa9.71□□□□□ -0.85
CCDC88A-214ENST00000621814 FABP2P12104 132 aa9.71□□□□□ -0.85
CCDC88A-214ENST00000621814 SCGB2A2Q13296 93 aa9.71□□□□□ -0.85
CCDC88A-214ENST00000621814 CDKN1BP46527 198 aa9.71□□□□□ -0.86
CCDC88A-214ENST00000621814 DOPEY1Q5JWR5 2465 aa9.71□□□□□ -0.86
CCDC88A-214ENST00000621814 F8VRH5 84 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 K7EP34 96 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 NDUFS8O00217 210 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 IGLV1-40P01703 118 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 PLNP26678 52 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 ID1P41134 155 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 SYNJ2BPP57105 145 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 CEND1Q8N111 149 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 ATP6V0BQ99437 205 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 CYSLTR1Q9Y271 337 aa9.7□□□□□ -0.86
CCDC88A-214ENST00000621814 DUSP14O95147 198 aaKnown RBP9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 HIST2H2BDQ6DRA6 164 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 ZNF256Q9Y2P7 627 aaPredicted RBP9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 AGRNO00468 2067 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 OR11H12B2RN74 326 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 PRB1P04280 392 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 RPL39P62891 51 aaKnown RBP9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 CD300EQ496F6 205 aaPredicted RBP9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 OR11H1Q8NG94 326 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 OR11H2Q8NH07 326 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 TOMM6Q96B49 74 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 PRSS29PA6NIE9 313 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 PRSS47A8MTI9 375 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 H3BUA1 57 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 SPINK13Q1W4C9 94 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 UFSP1Q6NVU6 142 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 BAALCQ8WXS3 180 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 MDFICQ9P1T7 246 aa9.69□□□□□ -0.86
CCDC88A-214ENST00000621814 MUC4Q99102 2169 aa9.68□□□□□ -0.86
CCDC88A-214ENST00000621814 RIPPLY3P57055 190 aa9.68□□□□□ -0.86
CCDC88A-214ENST00000621814 DCANP1Q8TF63 244 aa9.68□□□□□ -0.86
CCDC88A-214ENST00000621814 K7ERU9 68 aa9.68□□□□□ -0.86
CCDC88A-214ENST00000621814 HLA-DRB4P13762 266 aa9.68□□□□□ -0.86
CCDC88A-214ENST00000621814 MTURNQ8N3F0 131 aa9.68□□□□□ -0.86
CCDC88A-214ENST00000621814 C20orf78Q9BR46 151 aa9.68□□□□□ -0.86
CCDC88A-214ENST00000621814 TP53TG1Q9Y2A0 90 aa9.68□□□□□ -0.86
CCDC88A-214ENST00000621814 HLA-DRB4X5D2U9 266 aa9.68□□□□□ -0.86
CCDC88A-214ENST00000621814 RPL24P83731 157 aaKnown RBP9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 SFTA2Q6UW10 78 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 NEXN-AS1Q8NBZ9 246 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 KLHL30-AS1Q8NEE0 82 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 FAM19A4Q96LR4 140 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 LRRK2Q5S007 2527 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 RNF223E7ERA6 249 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 ZNF56Q15929 161 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 SUMO4Q6EEV6 95 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 SCGB1D4Q6XE38 83 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 HIGD1BQ9P298 99 aa9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 ANKRD17O75179 2603 aaKnown RBP9.67□□□□□ -0.86
CCDC88A-214ENST00000621814 FBN2P35556 2912 aa9.66□□□□□ -0.86
CCDC88A-214ENST00000621814 MXRA5Q9NR99 2828 aa9.66□□□□□ -0.86
CCDC88A-214ENST00000621814 ABCA12Q86UK0 2595 aa9.66□□□□□ -0.86
CCDC88A-214ENST00000621814 PSMB8P28062 276 aa9.66□□□□□ -0.86
CCDC88A-214ENST00000621814 AMTNQ6UX39 209 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms