RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 FAM231DQ6ZW35 169 aa13.36□□□□□ -0.27
CCDC9-205ENST00000600117 MRPL16Q9NX20 251 aaKnown RBP13.36□□□□□ -0.27
CCDC9-205ENST00000600117 P01737 135 aa13.35□□□□□ -0.27
CCDC9-205ENST00000600117 DEFB130BP0DP73 79 aa13.35□□□□□ -0.27
CCDC9-205ENST00000600117 DEFB130AP0DP74 79 aa13.35□□□□□ -0.27
CCDC9-205ENST00000600117 DAD1P61803 113 aa13.35□□□□□ -0.27
CCDC9-205ENST00000600117 OR2D3Q8NGH3 330 aa13.35□□□□□ -0.27
CCDC9-205ENST00000600117 MUC4Q99102 2169 aa13.35□□□□□ -0.27
CCDC9-205ENST00000600117 TRGV1A0A0A0MS02 117 aa13.34□□□□□ -0.27
CCDC9-205ENST00000600117 GAGE12BA1L429 117 aa13.34□□□□□ -0.27
CCDC9-205ENST00000600117 GAGE7O76087 117 aa13.34□□□□□ -0.27
CCDC9-205ENST00000600117 GAGE12FP0CL80 117 aa13.34□□□□□ -0.27
CCDC9-205ENST00000600117 GAGE12GP0CL81 117 aa13.34□□□□□ -0.27
CCDC9-205ENST00000600117 GAGE12IP0CL82 117 aa13.34□□□□□ -0.27
CCDC9-205ENST00000600117 S100A4P26447 101 aaKnown RBP13.34□□□□□ -0.27
CCDC9-205ENST00000600117 LGALS9BQ3B8N2 356 aa13.34□□□□□ -0.27
CCDC9-205ENST00000600117 ISOC2Q96AB3 205 aa13.34□□□□□ -0.27
CCDC9-205ENST00000600117 IL36BQ9NZH7 164 aa13.34□□□□□ -0.27
CCDC9-205ENST00000600117 TMEM218A2RU14 115 aa13.33□□□□□ -0.28
CCDC9-205ENST00000600117 H3BVH4 76 aa13.33□□□□□ -0.28
CCDC9-205ENST00000600117 M0R2P5 195 aa13.33□□□□□ -0.28
CCDC9-205ENST00000600117 ARMS2P0C7Q2 107 aa13.33□□□□□ -0.28
CCDC9-205ENST00000600117 RPS20P60866 119 aaKnown RBP13.33□□□□□ -0.28
CCDC9-205ENST00000600117 RASL10AQ92737 203 aa13.33□□□□□ -0.28
CCDC9-205ENST00000600117 C18orf15Q96N68 181 aa13.33□□□□□ -0.28
CCDC9-205ENST00000600117 SCRT2Q9NQ03 307 aa13.33□□□□□ -0.28
CCDC9-205ENST00000600117 LY6G6CO95867 125 aa13.32□□□□□ -0.28
CCDC9-205ENST00000600117 MED14OSP0DP75 135 aa13.32□□□□□ -0.28
CCDC9-205ENST00000600117 GZMBP10144 247 aa13.32□□□□□ -0.28
CCDC9-205ENST00000600117 ADCYAP1P18509 176 aa13.32□□□□□ -0.28
CCDC9-205ENST00000600117 ADIRFQ15847 76 aa13.32□□□□□ -0.28
CCDC9-205ENST00000600117 PTH2Q96A98 100 aa13.32□□□□□ -0.28
CCDC9-205ENST00000600117 RPP21Q9H633 154 aaKnown RBP13.32□□□□□ -0.28
CCDC9-205ENST00000600117 OSTCQ9NRP0 149 aa13.32□□□□□ -0.28
CCDC9-205ENST00000600117 GATCO43716 136 aaKnown RBP13.31□□□□□ -0.28
CCDC9-205ENST00000600117 ERVFC1-1P60608 527 aa13.31□□□□□ -0.28
CCDC9-205ENST00000600117 PHLDA1Q8WV24 401 aaPredicted RBP13.31□□□□□ -0.28
CCDC9-205ENST00000600117 SSBP4Q9BWG4 385 aaPredicted RBP13.31□□□□□ -0.28
CCDC9-205ENST00000600117 SNAI2O43623 268 aa13.3□□□□□ -0.28
CCDC9-205ENST00000600117 IGLC6P0CF74 106 aa13.3□□□□□ -0.28
CCDC9-205ENST00000600117 VPS13DQ5THJ4 4388 aa13.3□□□□□ -0.28
CCDC9-205ENST00000600117 DNAH6Q9C0G6 4158 aa13.29□□□□□ -0.28
CCDC9-205ENST00000600117 TRAV10A0A0B4J240 114 aa13.29□□□□□ -0.28
CCDC9-205ENST00000600117 OR5AL1P0C617 328 aa13.29□□□□□ -0.28
CCDC9-205ENST00000600117 ZNF876PQ49A33 203 aa13.29□□□□□ -0.28
CCDC9-205ENST00000600117 POM121L12Q8N7R1 296 aa13.29□□□□□ -0.28
CCDC9-205ENST00000600117 TRGV2A0A075B6R0 118 aa13.28□□□□□ -0.28
CCDC9-205ENST00000600117 XKRY2A2RUG3 117 aa13.28□□□□□ -0.28
CCDC9-205ENST00000600117 CT83Q5H943 113 aa13.28□□□□□ -0.28
CCDC9-205ENST00000600117 SFRP2Q96HF1 295 aa13.28□□□□□ -0.28
CCDC9-205ENST00000600117 V9GYV3 84 aa13.28□□□□□ -0.28
CCDC9-205ENST00000600117 DEFB131BA0A096LNP1 70 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 F8W036 122 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 ATP5G1P05496 136 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 PIK3CD-AS1Q5SR53 167 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 DMRTA1Q5VZB9 504 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 CEMP1Q6PRD7 247 aaPredicted RBP13.27□□□□□ -0.29
CCDC9-205ENST00000600117 FER1L6-AS1Q8NA97 138 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 OR10G8Q8NGN5 311 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 OR10AG1Q8NH19 301 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 NDUFAF3Q9BU61 184 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 SEC11CQ9BY50 192 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 PHLDA3Q9Y5J5 127 aa13.27□□□□□ -0.29
CCDC9-205ENST00000600117 NXPH4O95158 308 aa13.26□□□□□ -0.29
CCDC9-205ENST00000600117 HTN3P15516 51 aa13.26□□□□□ -0.29
CCDC9-205ENST00000600117 PNRC1Q12796 327 aaPredicted RBP13.26□□□□□ -0.29
CCDC9-205ENST00000600117 C15orf54Q8N8G6 183 aa13.26□□□□□ -0.29
CCDC9-205ENST00000600117 GTSF1Q8WW33 167 aa13.26□□□□□ -0.29
CCDC9-205ENST00000600117 NACAE9PAV3 2078 aa13.25□□□□□ -0.29
CCDC9-205ENST00000600117 TRAV4A0A0B4J268 109 aa13.25□□□□□ -0.29
CCDC9-205ENST00000600117 NUPR2A6NF83 97 aa13.25□□□□□ -0.29
CCDC9-205ENST00000600117 RS1O15537 224 aa13.25□□□□□ -0.29
CCDC9-205ENST00000600117 HOXA5P20719 270 aa13.25□□□□□ -0.29
CCDC9-205ENST00000600117 C10orf91Q5T1B1 145 aa13.25□□□□□ -0.29
CCDC9-205ENST00000600117 ZFP82Q8N141 532 aa13.25□□□□□ -0.29
CCDC9-205ENST00000600117 SYT8Q8NBV8 401 aa13.25□□□□□ -0.29
CCDC9-205ENST00000600117 ZNF479Q96JC4 524 aa13.25□□□□□ -0.29
CCDC9-205ENST00000600117 PKHD1P08F94 4074 aa13.24□□□□□ -0.29
CCDC9-205ENST00000600117 MUC21A0A0G2JKD1 596 aa13.24□□□□□ -0.29
CCDC9-205ENST00000600117 MUC21A0A140T8X8 626 aa13.24□□□□□ -0.29
CCDC9-205ENST00000600117 A0A1W2PPQ1 181 aa13.24□□□□□ -0.29
CCDC9-205ENST00000600117 A8MWL6 223 aa13.24□□□□□ -0.29
CCDC9-205ENST00000600117 M0R381 172 aa13.24□□□□□ -0.29
CCDC9-205ENST00000600117 IGHV3-53P01767 116 aa13.24□□□□□ -0.29
CCDC9-205ENST00000600117 CTRLP40313 264 aa13.24□□□□□ -0.29
CCDC9-205ENST00000600117 JPT2Q9H910 190 aa13.24□□□□□ -0.29
CCDC9-205ENST00000600117 F5H768 121 aa13.23□□□□□ -0.29
CCDC9-205ENST00000600117 CFAP126Q5VTH2 177 aa13.23□□□□□ -0.29
CCDC9-205ENST00000600117 LYZL1Q6UWQ5 148 aa13.23□□□□□ -0.29
CCDC9-205ENST00000600117 TSKUQ8WUA8 353 aa13.23□□□□□ -0.29
CCDC9-205ENST00000600117 TPPP3Q9BW30 176 aa13.23□□□□□ -0.29
CCDC9-205ENST00000600117 CARHSP1Q9Y2V2 147 aaKnown RBP13.23□□□□□ -0.29
CCDC9-205ENST00000600117 F2Z2F3 143 aa13.22□□□□□ -0.29
CCDC9-205ENST00000600117 FOXA3P55318 350 aaPredicted RBP13.22□□□□□ -0.29
CCDC9-205ENST00000600117 FHL2Q14192 279 aa13.22□□□□□ -0.29
CCDC9-205ENST00000600117 OR4C5Q8NGB2 326 aa13.22□□□□□ -0.29
CCDC9-205ENST00000600117 CNFNQ9BYD5 112 aa13.22□□□□□ -0.29
CCDC9-205ENST00000600117 GFRA4Q9GZZ7 299 aa13.22□□□□□ -0.29
CCDC9-205ENST00000600117 IGHV4-4A0A075B6R2 117 aa13.21□□□□□ -0.29
CCDC9-205ENST00000600117 A8MWV9 139 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms