RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 IL36BQ9NZH7 164 aa13.55□□□□□ -0.24
SHKBP1-221ENST00000599833 DNAH11Q96DT5 4516 aa13.54□□□□□ -0.24
SHKBP1-221ENST00000599833 TRAV4A0A0B4J268 109 aa13.54□□□□□ -0.24
SHKBP1-221ENST00000599833 ORM1P02763 201 aa13.54□□□□□ -0.24
SHKBP1-221ENST00000599833 CRYBA4P53673 196 aa13.54□□□□□ -0.24
SHKBP1-221ENST00000599833 A0A096LPF7 62 aa13.53□□□□□ -0.24
SHKBP1-221ENST00000599833 GRIFINA4D1Z8 144 aa13.53□□□□□ -0.24
SHKBP1-221ENST00000599833 RBFOX3A6NFN3 312 aa13.53□□□□□ -0.24
SHKBP1-221ENST00000599833 RPL19P84098 196 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-221ENST00000599833 ZNF876PQ49A33 203 aa13.53□□□□□ -0.24
SHKBP1-221ENST00000599833 PCNPQ8WW12 178 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-221ENST00000599833 MED9Q9NWA0 146 aa13.53□□□□□ -0.24
SHKBP1-221ENST00000599833 C19orf71A6NCJ1 209 aa13.52□□□□□ -0.25
SHKBP1-221ENST00000599833 H3BVH4 76 aa13.52□□□□□ -0.25
SHKBP1-221ENST00000599833 RS1O15537 224 aa13.52□□□□□ -0.25
SHKBP1-221ENST00000599833 NUDT3O95989 172 aa13.52□□□□□ -0.25
SHKBP1-221ENST00000599833 ASIPP42127 132 aa13.52□□□□□ -0.25
SHKBP1-221ENST00000599833 RNF212Q495C1 297 aa13.52□□□□□ -0.25
SHKBP1-221ENST00000599833 CFAP126Q5VTH2 177 aa13.52□□□□□ -0.25
SHKBP1-221ENST00000599833 BIRC6Q9NR09 4857 aa13.52□□□□□ -0.25
SHKBP1-221ENST00000599833 PKD1P98161 4303 aa13.52□□□□□ -0.25
SHKBP1-221ENST00000599833 TMSB15BA0A087X1C1 80 aa13.51□□□□□ -0.25
SHKBP1-221ENST00000599833 C9JCJ5 164 aa13.51□□□□□ -0.25
SHKBP1-221ENST00000599833 CXCL1P09341 107 aa13.51□□□□□ -0.25
SHKBP1-221ENST00000599833 ARMS2P0C7Q2 107 aa13.51□□□□□ -0.25
SHKBP1-221ENST00000599833 SMIM12Q96EX1 92 aa13.51□□□□□ -0.25
SHKBP1-221ENST00000599833 PRO0255Q9UI72 69 aa13.51□□□□□ -0.25
SHKBP1-221ENST00000599833 PIK3CD-AS1Q5SR53 167 aa13.5□□□□□ -0.25
SHKBP1-221ENST00000599833 UFSP1Q6NVU6 142 aa13.5□□□□□ -0.25
SHKBP1-221ENST00000599833 FAM210AQ96ND0 272 aa13.5□□□□□ -0.25
SHKBP1-221ENST00000599833 HHLA3Q9XRX5 114 aa13.5□□□□□ -0.25
SHKBP1-221ENST00000599833 LINC00588Q9Y4M8 146 aa13.5□□□□□ -0.25
SHKBP1-221ENST00000599833 PKHD1P08F94 4074 aa13.5□□□□□ -0.25
SHKBP1-221ENST00000599833 TMEM250H0YL14 139 aa13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 NDUFS6O75380 124 aaKnown RBP13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 GATA1P15976 413 aaPredicted RBP13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 GNG4P50150 75 aa13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 TOR2AQ5JU69 321 aa13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 DMRTA1Q5VZB9 504 aa13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 PRR27Q6MZM9 219 aa13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 OR4C5Q8NGB2 326 aa13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 PARLQ9H300 379 aa13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 JPT2Q9H910 190 aa13.49□□□□□ -0.25
SHKBP1-221ENST00000599833 K7EN84 100 aa13.48□□□□□ -0.25
SHKBP1-221ENST00000599833 MED14OSP0DP75 135 aa13.48□□□□□ -0.25
SHKBP1-221ENST00000599833 S100A4P26447 101 aaKnown RBP13.48□□□□□ -0.25
SHKBP1-221ENST00000599833 ESRGQ1W209 222 aa13.48□□□□□ -0.25
SHKBP1-221ENST00000599833 SSBP4Q9BWG4 385 aaPredicted RBP13.48□□□□□ -0.25
SHKBP1-221ENST00000599833 PAX4O43316 350 aa13.47□□□□□ -0.25
SHKBP1-221ENST00000599833 SNAI2O43623 268 aa13.47□□□□□ -0.25
SHKBP1-221ENST00000599833 NXPH4O95158 308 aa13.47□□□□□ -0.25
SHKBP1-221ENST00000599833 SLAQ13239 276 aa13.47□□□□□ -0.25
SHKBP1-221ENST00000599833 Q6ZSN1 163 aa13.47□□□□□ -0.25
SHKBP1-221ENST00000599833 ZNRF2Q8NHG8 242 aa13.47□□□□□ -0.25
SHKBP1-221ENST00000599833 TRGV4A0A0C4DH28 118 aa13.46□□□□□ -0.25
SHKBP1-221ENST00000599833 SAMD10Q9BYL1 202 aa13.46□□□□□ -0.25
SHKBP1-221ENST00000599833 LOC100131303A0A0U1RQF7 123 aa13.45□□□□□ -0.26
SHKBP1-221ENST00000599833 C9JQL5 133 aa13.45□□□□□ -0.26
SHKBP1-221ENST00000599833 SRP19P09132 144 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-221ENST00000599833 Q6ZR54 194 aa13.45□□□□□ -0.26
SHKBP1-221ENST00000599833 OCC1Q8TAD7 63 aa13.45□□□□□ -0.26
SHKBP1-221ENST00000599833 K7EQD1 137 aa13.44□□□□□ -0.26
SHKBP1-221ENST00000599833 IGLC6P0CF74 106 aa13.44□□□□□ -0.26
SHKBP1-221ENST00000599833 MGST1P10620 155 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-221ENST00000599833 FAM3BP58499 235 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-221ENST00000599833 SRSF3P84103 164 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-221ENST00000599833 IGHV3-73A0A0B4J1V6 119 aa13.43□□□□□ -0.26
SHKBP1-221ENST00000599833 CIDEAO60543 219 aa13.43□□□□□ -0.26
SHKBP1-221ENST00000599833 CRYGDP07320 174 aa13.43□□□□□ -0.26
SHKBP1-221ENST00000599833 UBE2DNLQ8IWF7 75 aa13.43□□□□□ -0.26
SHKBP1-221ENST00000599833 SLC25A29Q8N8R3 303 aa13.43□□□□□ -0.26
SHKBP1-221ENST00000599833 OR10AG1Q8NH19 301 aa13.43□□□□□ -0.26
SHKBP1-221ENST00000599833 SFRP2Q96HF1 295 aa13.43□□□□□ -0.26
SHKBP1-221ENST00000599833 UPK3BQ9BT76 320 aa13.43□□□□□ -0.26
SHKBP1-221ENST00000599833 ICOSQ9Y6W8 199 aa13.43□□□□□ -0.26
SHKBP1-221ENST00000599833 DYNC1H1Q14204 4646 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-221ENST00000599833 A8MWV9 139 aa13.42□□□□□ -0.26
SHKBP1-221ENST00000599833 OR5AL1P0C617 328 aa13.42□□□□□ -0.26
SHKBP1-221ENST00000599833 GZMBP10144 247 aa13.42□□□□□ -0.26
SHKBP1-221ENST00000599833 ZFP2Q6ZN57 461 aa13.42□□□□□ -0.26
SHKBP1-221ENST00000599833 EIF5A2Q9GZV4 153 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-221ENST00000599833 GYPEP15421 78 aa13.41□□□□□ -0.26
SHKBP1-221ENST00000599833 CCL18P55774 89 aa13.41□□□□□ -0.26
SHKBP1-221ENST00000599833 NUDT10Q8NFP7 164 aa13.41□□□□□ -0.26
SHKBP1-221ENST00000599833 NUDT11Q96G61 164 aa13.41□□□□□ -0.26
SHKBP1-221ENST00000599833 Q9UF83 564 aa13.41□□□□□ -0.26
SHKBP1-221ENST00000599833 MRPS16Q9Y3D3 137 aaKnown RBP13.41□□□□□ -0.26
SHKBP1-221ENST00000599833 PHLDA3Q9Y5J5 127 aa13.41□□□□□ -0.26
SHKBP1-221ENST00000599833 TRBV6-4A0A1B0GX49 114 aa13.4□□□□□ -0.26
SHKBP1-221ENST00000599833 LINC00694P0DN24 101 aa13.4□□□□□ -0.26
SHKBP1-221ENST00000599833 MRPL23Q16540 153 aaKnown RBP13.4□□□□□ -0.26
SHKBP1-221ENST00000599833 ZFP82Q8N141 532 aa13.4□□□□□ -0.26
SHKBP1-221ENST00000599833 OR2D3Q8NGH3 330 aa13.4□□□□□ -0.26
SHKBP1-221ENST00000599833 RNASE7Q9H1E1 156 aaKnown RBP13.4□□□□□ -0.26
SHKBP1-221ENST00000599833 IGLV2-18A0A075B6J9 118 aa13.39□□□□□ -0.27
SHKBP1-221ENST00000599833 M0R381 172 aa13.39□□□□□ -0.27
SHKBP1-221ENST00000599833 IFITM2Q01629 132 aa13.39□□□□□ -0.27
SHKBP1-221ENST00000599833 LYPD5Q6UWN5 251 aa13.39□□□□□ -0.27
SHKBP1-221ENST00000599833 SYT8Q8NBV8 401 aa13.39□□□□□ -0.27
SHKBP1-221ENST00000599833 LY96Q9Y6Y9 160 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms