RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 PFDN1O60925 122 aa13.86□□□□□ -0.19
CLK3-225ENST00000569063 LTAP01374 205 aa13.86□□□□□ -0.19
CLK3-225ENST00000569063 UBE2G1P62253 170 aa13.86□□□□□ -0.19
CLK3-225ENST00000569063 PIK3CD-AS1Q5SR53 167 aa13.86□□□□□ -0.19
CLK3-225ENST00000569063 LOC100131303A0A0U1RQF7 123 aa13.85□□□□□ -0.19
CLK3-225ENST00000569063 TPT1P13693 172 aaKnown RBP13.85□□□□□ -0.19
CLK3-225ENST00000569063 S100A4P26447 101 aaKnown RBP13.85□□□□□ -0.19
CLK3-225ENST00000569063 ASIPP42127 132 aa13.85□□□□□ -0.19
CLK3-225ENST00000569063 SLC25A29Q8N8R3 303 aa13.85□□□□□ -0.19
CLK3-225ENST00000569063 TRBV6-4A0A1B0GX49 114 aa13.84□□□□□ -0.19
CLK3-225ENST00000569063 B4DEV8 164 aa13.84□□□□□ -0.19
CLK3-225ENST00000569063 KRBOX1C9JBD0 128 aa13.84□□□□□ -0.19
CLK3-225ENST00000569063 LINC00315P59091 139 aa13.84□□□□□ -0.19
CLK3-225ENST00000569063 LGALSLQ3ZCW2 172 aaPredicted RBP13.84□□□□□ -0.19
CLK3-225ENST00000569063 DNLZQ5SXM8 178 aa13.84□□□□□ -0.19
CLK3-225ENST00000569063 FAM162BQ5T6X4 162 aa13.84□□□□□ -0.19
CLK3-225ENST00000569063 IL36BQ9NZH7 164 aa13.84□□□□□ -0.19
CLK3-225ENST00000569063 HERC2O95714 4834 aa13.84□□□□□ -0.19
CLK3-225ENST00000569063 KIAA1109Q2LD37 5005 aa13.83□□□□□ -0.2
CLK3-225ENST00000569063 SH2D1AO60880 128 aa13.83□□□□□ -0.2
CLK3-225ENST00000569063 H2AFB1P0C5Y9 115 aa13.83□□□□□ -0.2
CLK3-225ENST00000569063 TIRAPP58753 221 aa13.83□□□□□ -0.2
CLK3-225ENST00000569063 ZNF674Q2M3X9 581 aa13.83□□□□□ -0.2
CLK3-225ENST00000569063 ZNF575Q86XF7 245 aa13.83□□□□□ -0.2
CLK3-225ENST00000569063 PRADC1Q9BSG0 188 aa13.83□□□□□ -0.2
CLK3-225ENST00000569063 A0A1B0GV50 99 aa13.82□□□□□ -0.2
CLK3-225ENST00000569063 K7EP13 123 aa13.82□□□□□ -0.2
CLK3-225ENST00000569063 S100A9P06702 114 aaKnown RBP13.82□□□□□ -0.2
CLK3-225ENST00000569063 MGST1P10620 155 aaKnown RBP13.82□□□□□ -0.2
CLK3-225ENST00000569063 AKR1C3P42330 323 aa13.82□□□□□ -0.2
CLK3-225ENST00000569063 TCTE3Q8IZS6 198 aa13.82□□□□□ -0.2
CLK3-225ENST00000569063 NHLRC2Q8NBF2 726 aa13.82□□□□□ -0.2
CLK3-225ENST00000569063 LY96Q9Y6Y9 160 aa13.82□□□□□ -0.2
CLK3-225ENST00000569063 DYNC1H1Q14204 4646 aaKnown RBP13.81□□□□□ -0.2
CLK3-225ENST00000569063 TRAV9-2A0A087WT02 112 aa13.81□□□□□ -0.2
CLK3-225ENST00000569063 IGHV3-73A0A0B4J1V6 119 aa13.81□□□□□ -0.2
CLK3-225ENST00000569063 A8MWV9 139 aa13.81□□□□□ -0.2
CLK3-225ENST00000569063 RHOHQ15669 191 aa13.81□□□□□ -0.2
CLK3-225ENST00000569063 ZFP2Q6ZN57 461 aa13.81□□□□□ -0.2
CLK3-225ENST00000569063 Q6ZRN7 208 aaPredicted RBP13.81□□□□□ -0.2
CLK3-225ENST00000569063 WFDC10BQ8IUB3 73 aa13.81□□□□□ -0.2
CLK3-225ENST00000569063 DNAH11Q96DT5 4516 aa13.8□□□□□ -0.2
CLK3-225ENST00000569063 M0R036 132 aa13.8□□□□□ -0.2
CLK3-225ENST00000569063 DNAH10OSP0CZ25 163 aa13.8□□□□□ -0.2
CLK3-225ENST00000569063 LINC01559Q495D7 138 aa13.8□□□□□ -0.2
CLK3-225ENST00000569063 PARLQ9H300 379 aa13.8□□□□□ -0.2
CLK3-225ENST00000569063 SCO2A0A1W2PP80 73 aa13.79□□□□□ -0.2
CLK3-225ENST00000569063 H3BVH4 76 aa13.79□□□□□ -0.2
CLK3-225ENST00000569063 ARMS2P0C7Q2 107 aa13.79□□□□□ -0.2
CLK3-225ENST00000569063 RAB5CP51148 216 aa13.79□□□□□ -0.2
CLK3-225ENST00000569063 EIF5AL1Q6IS14 154 aaKnown RBP13.79□□□□□ -0.2
CLK3-225ENST00000569063 TRAV1-1A0A0B4J248 108 aa13.78□□□□□ -0.2
CLK3-225ENST00000569063 C16orf90A8MZG2 172 aa13.78□□□□□ -0.2
CLK3-225ENST00000569063 DMRTA1Q5VZB9 504 aa13.78□□□□□ -0.2
CLK3-225ENST00000569063 UFSP1Q6NVU6 142 aa13.78□□□□□ -0.2
CLK3-225ENST00000569063 Q6ZNX1 250 aa13.78□□□□□ -0.2
CLK3-225ENST00000569063 SCRT2Q9NQ03 307 aa13.78□□□□□ -0.2
CLK3-225ENST00000569063 GRIFINA4D1Z8 144 aa13.77□□□□□ -0.21
CLK3-225ENST00000569063 EVI2AP22794 236 aa13.77□□□□□ -0.21
CLK3-225ENST00000569063 Q6ZSN1 163 aa13.77□□□□□ -0.21
CLK3-225ENST00000569063 NFE4Q86UQ8 179 aa13.77□□□□□ -0.21
CLK3-225ENST00000569063 SYT8Q8NBV8 401 aa13.77□□□□□ -0.21
CLK3-225ENST00000569063 MLST8Q9BVC4 326 aa13.77□□□□□ -0.21
CLK3-225ENST00000569063 C1QBP02746 253 aa13.76□□□□□ -0.21
CLK3-225ENST00000569063 CCL20P78556 96 aa13.76□□□□□ -0.21
CLK3-225ENST00000569063 SAMD10Q9BYL1 202 aa13.76□□□□□ -0.21
CLK3-225ENST00000569063 JPT2Q9H910 190 aa13.76□□□□□ -0.21
CLK3-225ENST00000569063 MANBALQ9NQG1 85 aa13.76□□□□□ -0.21
CLK3-225ENST00000569063 TNFRSF18Q9Y5U5 241 aa13.76□□□□□ -0.21
CLK3-225ENST00000569063 SPATA12Q7Z6I5 190 aa13.75□□□□□ -0.21
CLK3-225ENST00000569063 BAGE2Q86Y30 109 aa13.75□□□□□ -0.21
CLK3-225ENST00000569063 BOLA1Q9Y3E2 137 aa13.75□□□□□ -0.21
CLK3-225ENST00000569063 PHLDA3Q9Y5J5 127 aa13.75□□□□□ -0.21
CLK3-225ENST00000569063 TMSB15BA0A087X1C1 80 aa13.74□□□□□ -0.21
CLK3-225ENST00000569063 IGHV3-38A0A0C4DH36 116 aa13.74□□□□□ -0.21
CLK3-225ENST00000569063 SULT1A2P50226 295 aa13.74□□□□□ -0.21
CLK3-225ENST00000569063 C10orf126Q8N4M7 172 aa13.74□□□□□ -0.21
CLK3-225ENST00000569063 ATP6V0E2Q8NHE4 81 aa13.74□□□□□ -0.21
CLK3-225ENST00000569063 GTSF1LQ9H1H1 148 aa13.74□□□□□ -0.21
CLK3-225ENST00000569063 MSRB1Q9NZV6 116 aa13.74□□□□□ -0.21
CLK3-225ENST00000569063 GNG13Q9P2W3 67 aa13.74□□□□□ -0.21
CLK3-225ENST00000569063 TRAV8-6A0A0B4J262 113 aa13.73□□□□□ -0.21
CLK3-225ENST00000569063 TEX46H3BTG2 121 aa13.73□□□□□ -0.21
CLK3-225ENST00000569063 RHODO00212 210 aa13.73□□□□□ -0.21
CLK3-225ENST00000569063 CRYGDP07320 174 aa13.73□□□□□ -0.21
CLK3-225ENST00000569063 SFRP2Q96HF1 295 aa13.73□□□□□ -0.21
CLK3-225ENST00000569063 LINC00694P0DN24 101 aa13.72□□□□□ -0.21
CLK3-225ENST00000569063 KRTAP10-2P60368 255 aa13.72□□□□□ -0.21
CLK3-225ENST00000569063 LINC01556Q5JQF7 62 aa13.72□□□□□ -0.21
CLK3-225ENST00000569063 LELP1Q5T871 98 aa13.72□□□□□ -0.21
CLK3-225ENST00000569063 SLC51BQ86UW2 128 aa13.72□□□□□ -0.21
CLK3-225ENST00000569063 C11orf52Q96A22 123 aa13.72□□□□□ -0.21
CLK3-225ENST00000569063 CXCL1P09341 107 aa13.71□□□□□ -0.21
CLK3-225ENST00000569063 RPL35P42766 123 aaKnown RBP13.71□□□□□ -0.21
CLK3-225ENST00000569063 OR10J3Q5JRS4 329 aa13.71□□□□□ -0.21
CLK3-225ENST00000569063 ZFP82Q8N141 532 aa13.71□□□□□ -0.21
CLK3-225ENST00000569063 M0R381 172 aa13.7□□□□□ -0.22
CLK3-225ENST00000569063 C14orf178Q8N769 122 aaPredicted RBP13.7□□□□□ -0.22
CLK3-225ENST00000569063 Q9UF83 564 aa13.7□□□□□ -0.22
CLK3-225ENST00000569063 GAGE12JA6NER3 117 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms