RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 A0A1W2PPV4 95 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 RNF222A6NCQ9 220 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 GAGE12JA6NER3 117 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 RBFOX3A6NFN3 312 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 GCGP01275 180 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 GAGE1Q13065 139 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 GAGE4Q13068 117 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 GAGE5Q13069 117 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 GAGE13Q4V321 117 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 ZFP2Q6ZN57 461 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 TMEM75Q8N9X5 138 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 SMIM3Q9BZL3 60 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 PARLQ9H300 379 aa11.53□□□□□ -0.56
CLK3-221ENST00000568139 A0A087WWC5 75 aa11.52□□□□□ -0.57
CLK3-221ENST00000568139 H2BFSP57053 126 aa11.52□□□□□ -0.57
CLK3-221ENST00000568139 PIK3CD-AS1Q5SR53 167 aa11.52□□□□□ -0.57
CLK3-221ENST00000568139 CYB561D1Q8N8Q1 229 aa11.52□□□□□ -0.57
CLK3-221ENST00000568139 CIRBP-AS1Q8TBR5 109 aa11.52□□□□□ -0.57
CLK3-221ENST00000568139 Q9UF83 564 aa11.52□□□□□ -0.57
CLK3-221ENST00000568139 PSG8Q9UQ74 426 aa11.52□□□□□ -0.57
CLK3-221ENST00000568139 HMCN2Q8NDA2 5059 aa11.52□□□□□ -0.57
CLK3-221ENST00000568139 A8MWV9 139 aa11.51□□□□□ -0.57
CLK3-221ENST00000568139 MPC2O95563 127 aa11.51□□□□□ -0.57
CLK3-221ENST00000568139 TCRAP04437 139 aa11.51□□□□□ -0.57
CLK3-221ENST00000568139 RPL12P30050 165 aaKnown RBP11.51□□□□□ -0.57
CLK3-221ENST00000568139 RAB2AP61019 212 aa11.51□□□□□ -0.57
CLK3-221ENST00000568139 C5orf17Q8NAS9 161 aa11.51□□□□□ -0.57
CLK3-221ENST00000568139 RMI2Q96E14 147 aa11.51□□□□□ -0.57
CLK3-221ENST00000568139 LINC00479Q96M42 142 aa11.51□□□□□ -0.57
CLK3-221ENST00000568139 WFDC1Q9HC57 220 aa11.51□□□□□ -0.57
CLK3-221ENST00000568139 HMGB3O15347 200 aaKnown RBP11.5□□□□□ -0.57
CLK3-221ENST00000568139 IGLV2-11P01706 119 aa11.5□□□□□ -0.57
CLK3-221ENST00000568139 SMUG1Q53HV7 270 aa11.5□□□□□ -0.57
CLK3-221ENST00000568139 UFSP1Q6NVU6 142 aa11.5□□□□□ -0.57
CLK3-221ENST00000568139 K7EQM0 130 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 PET100P0DJ07 73 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 ARL14EPLP0DKL9 152 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 FGF8P55075 233 aaPredicted RBP11.49□□□□□ -0.57
CLK3-221ENST00000568139 NIT1Q86X76 327 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 OR10G9Q8NGN4 311 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 OR10G7Q8NGN6 311 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 OR2T35Q8NGX2 323 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 SUN5Q8TC36 379 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 DNAJC30Q96LL9 226 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 SAMD10Q9BYL1 202 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 PLA2G2DQ9UNK4 145 aa11.49□□□□□ -0.57
CLK3-221ENST00000568139 IGKV2D-24A0A075B6R9 120 aa11.48□□□□□ -0.57
CLK3-221ENST00000568139 IGLV2-8P01709 118 aa11.48□□□□□ -0.57
CLK3-221ENST00000568139 SEC11BP0C7V7 166 aa11.48□□□□□ -0.57
CLK3-221ENST00000568139 FLI1Q01543 452 aaPredicted RBP11.48□□□□□ -0.57
CLK3-221ENST00000568139 LGALSLQ3ZCW2 172 aaPredicted RBP11.48□□□□□ -0.57
CLK3-221ENST00000568139 ZFP69Q49AA0 526 aa11.48□□□□□ -0.57
CLK3-221ENST00000568139 C14orf178Q8N769 122 aaPredicted RBP11.48□□□□□ -0.57
CLK3-221ENST00000568139 ENKURQ8TC29 256 aa11.48□□□□□ -0.57
CLK3-221ENST00000568139 IGKV3D-20A0A0C4DH25 116 aa11.47□□□□□ -0.57
CLK3-221ENST00000568139 STAG3L2P0CL84 134 aa11.47□□□□□ -0.57
CLK3-221ENST00000568139 STAG3L3P0CL85 134 aa11.47□□□□□ -0.57
CLK3-221ENST00000568139 PRNTQ86SH4 94 aa11.47□□□□□ -0.57
CLK3-221ENST00000568139 JPT2Q9H910 190 aa11.47□□□□□ -0.57
CLK3-221ENST00000568139 URGCP-MRPS24S4R325 110 aa11.47□□□□□ -0.57
CLK3-221ENST00000568139 FAT3Q8TDW7 4589 aa11.47□□□□□ -0.57
CLK3-221ENST00000568139 S100A4P26447 101 aaKnown RBP11.46□□□□□ -0.57
CLK3-221ENST00000568139 CDC34P49427 236 aaPredicted RBP11.46□□□□□ -0.57
CLK3-221ENST00000568139 SAPCD1Q5SSQ6 148 aa11.46□□□□□ -0.57
CLK3-221ENST00000568139 ATRAIDQ6UW56 229 aa11.46□□□□□ -0.57
CLK3-221ENST00000568139 LINC00299Q6ZSB3 139 aa11.46□□□□□ -0.57
CLK3-221ENST00000568139 NDUFA13Q9P0J0 144 aa11.46□□□□□ -0.57
CLK3-221ENST00000568139 KLK12Q9UKR0 248 aa11.46□□□□□ -0.57
CLK3-221ENST00000568139 EPDR1Q9UM22 224 aa11.46□□□□□ -0.57
CLK3-221ENST00000568139 UBR4Q5T4S7 5183 aa11.46□□□□□ -0.58
CLK3-221ENST00000568139 INMT-MINDY4F8WBC2 141 aa11.45□□□□□ -0.58
CLK3-221ENST00000568139 GCHFRP30047 84 aa11.45□□□□□ -0.58
CLK3-221ENST00000568139 SUMO1P63165 101 aaKnown RBP11.45□□□□□ -0.58
CLK3-221ENST00000568139 ASIPP42127 132 aa11.44□□□□□ -0.58
CLK3-221ENST00000568139 DMRTA1Q5VZB9 504 aa11.44□□□□□ -0.58
CLK3-221ENST00000568139 UBE2WQ96B02 151 aa11.44□□□□□ -0.58
CLK3-221ENST00000568139 CHCHD7Q9BUK0 85 aa11.44□□□□□ -0.58
CLK3-221ENST00000568139 IL36BQ9NZH7 164 aa11.44□□□□□ -0.58
CLK3-221ENST00000568139 ELOBQ15370 118 aa11.43□□□□□ -0.58
CLK3-221ENST00000568139 OR2G3Q8NGZ4 309 aa11.43□□□□□ -0.58
CLK3-221ENST00000568139 S100ZQ8WXG8 99 aa11.43□□□□□ -0.58
CLK3-221ENST00000568139 RAB24Q969Q5 203 aa11.43□□□□□ -0.58
CLK3-221ENST00000568139 FABP5P3A8MUU1 101 aa11.42□□□□□ -0.58
CLK3-221ENST00000568139 RHODO00212 210 aa11.42□□□□□ -0.58
CLK3-221ENST00000568139 MARVELD1Q9BSK0 173 aa11.42□□□□□ -0.58
CLK3-221ENST00000568139 A0A087WX48 190 aa11.41□□□□□ -0.58
CLK3-221ENST00000568139 UPK1BO75841 260 aa11.41□□□□□ -0.58
CLK3-221ENST00000568139 RPL37AP61513 92 aaKnown RBP11.41□□□□□ -0.58
CLK3-221ENST00000568139 Q0VG73 95 aa11.41□□□□□ -0.58
CLK3-221ENST00000568139 C14orf177Q52M58 125 aa11.41□□□□□ -0.58
CLK3-221ENST00000568139 DNLZQ5SXM8 178 aa11.41□□□□□ -0.58
CLK3-221ENST00000568139 TMEM167BQ9NRX6 74 aa11.41□□□□□ -0.58
CLK3-221ENST00000568139 SSNA1O43805 119 aa11.4□□□□□ -0.58
CLK3-221ENST00000568139 IFITM3Q01628 133 aa11.4□□□□□ -0.58
CLK3-221ENST00000568139 ARL2-SNX15V9GYD0 113 aa11.4□□□□□ -0.58
CLK3-221ENST00000568139 PKHD1L1Q86WI1 4243 aa11.39□□□□□ -0.59
CLK3-221ENST00000568139 TRAV34A0A0B4J273 112 aa11.39□□□□□ -0.59
CLK3-221ENST00000568139 B4DEV8 164 aa11.39□□□□□ -0.59
CLK3-221ENST00000568139 H3BVH4 76 aa11.39□□□□□ -0.59
CLK3-221ENST00000568139 CXorf1O96002 111 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 167.1 ms