RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ZNF506Q5JVG8 444 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 UFSP1Q6NVU6 142 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 TEX261Q6UWH6 196 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 LINC00528Q8N1L1 170 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 NDUFAF3Q9BU61 184 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 SAMD10Q9BYL1 202 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 SDF2L1Q9HCN8 221 aa6.39□□□□□ -1.39
VPS35-206ENST00000565228 TRGV2A0A075B6R0 118 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 A0A096LPF7 62 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 C19orf71A6NCJ1 209 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 C9JCJ5 164 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 H3BVH4 76 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 K7EN84 100 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 M0R2P5 195 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 PPT1P50897 306 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 IFITM2Q01629 132 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 DNLZQ5SXM8 178 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 FAM162BQ5T6X4 162 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 BAGE2Q86Y30 109 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 SCRT2Q9NQ03 307 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 VAX2Q9UIW0 290 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 LINC00588Q9Y4M8 146 aa6.38□□□□□ -1.39
VPS35-206ENST00000565228 RBFOX3A6NFN3 312 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 B4DEV8 164 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 RS1O15537 224 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 NUDT3O95989 172 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 ORM1P02763 201 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 ARMS2P0C7Q2 107 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 GZMBP10144 247 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 CRYBA4P53673 196 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 TCTAP57738 103 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 BLOC1S1P78537 153 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 ESRGQ1W209 222 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 TOR2AQ5JU69 321 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 CFAP126Q5VTH2 177 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 KCNS1Q96KK3 526 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 FAM210BQ96KR6 192 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 SPXQ9BT56 116 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 MED9Q9NWA0 146 aa6.37□□□□□ -1.39
VPS35-206ENST00000565228 IGHV3-73A0A0B4J1V6 119 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 TRAV4A0A0B4J268 109 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 MUC21A0A0G2JKD1 596 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 MUC21A0A140T8X8 626 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 SRP19P09132 144 aaKnown RBP6.36□□□□□ -1.39
VPS35-206ENST00000565228 PRR27Q6MZM9 219 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 OCC1Q8TAD7 63 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 PTH2Q96A98 100 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 FAM210AQ96ND0 272 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 KRTAP1-5Q9BYS1 174 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 PARLQ9H300 379 aa6.36□□□□□ -1.39
VPS35-206ENST00000565228 PKD1P98161 4303 aa6.35□□□□□ -1.39
VPS35-206ENST00000565228 S100A9P06702 114 aaKnown RBP6.35□□□□□ -1.39
VPS35-206ENST00000565228 ZNF876PQ49A33 203 aa6.35□□□□□ -1.39
VPS35-206ENST00000565228 OR10AG1Q8NH19 301 aa6.35□□□□□ -1.39
VPS35-206ENST00000565228 ZNRF2Q8NHG8 242 aa6.35□□□□□ -1.39
VPS35-206ENST00000565228 TXNDC17Q9BRA2 123 aa6.35□□□□□ -1.39
VPS35-206ENST00000565228 IL36BQ9NZH7 164 aa6.35□□□□□ -1.39
VPS35-206ENST00000565228 IGLV2-18A0A075B6J9 118 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 K7EQD1 137 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 SNAI2O43623 268 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 PDE6DO43924 150 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 CRYGDP07320 174 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 GATA1P15976 413 aaPredicted RBP6.34□□□□□ -1.39
VPS35-206ENST00000565228 ASIPP42127 132 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 Q6ZR54 194 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 C15orf53Q8NAA6 179 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 OR4C5Q8NGB2 326 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 SSBP4Q9BWG4 385 aaPredicted RBP6.34□□□□□ -1.39
VPS35-206ENST00000565228 RNASE7Q9H1E1 156 aaKnown RBP6.34□□□□□ -1.39
VPS35-206ENST00000565228 PGPEP1Q9NXJ5 209 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 HHLA3Q9XRX5 114 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 PKHD1P08F94 4074 aa6.34□□□□□ -1.39
VPS35-206ENST00000565228 DYNC1H1Q14204 4646 aaKnown RBP6.34□□□□□ -1.39
VPS35-206ENST00000565228 H3BNG1 76 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 M0R2N4 97 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 PAX4O43316 350 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 NXPH4O95158 308 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 IFNA1P01562 189 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 IGLC6P0CF74 106 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 LINC00694P0DN24 101 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 MGST1P10620 155 aaKnown RBP6.33□□□□□ -1.4
VPS35-206ENST00000565228 GNG4P50150 75 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 LINC00315P59091 139 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 C14orf178Q8N769 122 aaPredicted RBP6.33□□□□□ -1.4
VPS35-206ENST00000565228 SLC25A29Q8N8R3 303 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 NUDT10Q8NFP7 164 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 NUDT11Q96G61 164 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 MSRB1Q9NZV6 116 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 PRO0255Q9UI72 69 aa6.33□□□□□ -1.4
VPS35-206ENST00000565228 TMEM250H0YL14 139 aa6.32□□□□□ -1.4
VPS35-206ENST00000565228 RTL8CO15255 209 aa6.32□□□□□ -1.4
VPS35-206ENST00000565228 P0DMU3 169 aa6.32□□□□□ -1.4
VPS35-206ENST00000565228 FAM231AP0DMU4 169 aa6.32□□□□□ -1.4
VPS35-206ENST00000565228 FAM231CP0DMU5 169 aa6.32□□□□□ -1.4
VPS35-206ENST00000565228 GTSF1Q8WW33 167 aa6.32□□□□□ -1.4
VPS35-206ENST00000565228 SFRP2Q96HF1 295 aa6.32□□□□□ -1.4
VPS35-206ENST00000565228 KIF25-AS1Q9Y6Z4 181 aa6.32□□□□□ -1.4
VPS35-206ENST00000565228 DNAH5Q8TE73 4624 aa6.32□□□□□ -1.4
VPS35-206ENST00000565228 HERC1Q15751 4861 aa6.31□□□□□ -1.4
VPS35-206ENST00000565228 A0A087WWL8 130 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms