RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PHLDA3Q9Y5J5 127 aa6.61□□□□□ -1.35
VPS39-207ENST00000563692 MUC21A0A0G2JKD1 596 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 MUC21A0A140T8X8 626 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 A8MTW9 85 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 ZNF324O75467 553 aaPredicted RBP6.6□□□□□ -1.35
VPS39-207ENST00000563692 IGLV1-51P01701 117 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 ESDP10768 282 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 FABP4P15090 132 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 NUTF2P61970 127 aaKnown RBP6.6□□□□□ -1.35
VPS39-207ENST00000563692 SPINK13Q1W4C9 94 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 MUC21Q5SSG8 566 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 DMRTA1Q5VZB9 504 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 STHQ8IWL8 128 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 FAM110AQ9BQ89 295 aa6.6□□□□□ -1.35
VPS39-207ENST00000563692 IGHV1OR15-1A0A075B7D0 117 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 H3BVH4 76 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 GNRH2O43555 120 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 PPBPP02775 128 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 CD7P09564 240 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 CKS2P33552 79 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 TDRG1Q3Y452 100 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 AMTNQ6UX39 209 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 ORMDL3Q8N138 153 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 TMEM256Q8N2U0 113 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 OR10D4PQ8NGN7 298 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 C18orf32Q8TCD1 76 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 PACRGQ96M98 296 aaPredicted RBP6.59□□□□□ -1.35
VPS39-207ENST00000563692 HIST1H2BLQ99880 126 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 B9D2Q9BPU9 175 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 C20orf144Q9BQM9 153 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 SAMD10Q9BYL1 202 aa6.59□□□□□ -1.35
VPS39-207ENST00000563692 TIMM8BQ9Y5J9 83 aaPredicted RBP6.59□□□□□ -1.35
VPS39-207ENST00000563692 TRGV11A0A075B6L2 103 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 TRAV12-2A0A075B6T6 113 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 M0R2Z0 102 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 SERF1AO75920 110 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 KIR3DS1Q14943 382 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 Q6ZQT7 251 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 NIT1Q86X76 327 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 AMN1Q8IY45 258 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 SYT8Q8NBV8 401 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 CHCHD1Q96BP2 118 aaKnown RBP6.58□□□□□ -1.36
VPS39-207ENST00000563692 SCRT2Q9NQ03 307 aa6.58□□□□□ -1.36
VPS39-207ENST00000563692 CBY3A6NI87 242 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 IFITM10A6NMD0 228 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 HSBP1O75506 76 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 LINC00614P0C842 121 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 NHLRC4P0CG21 123 aaPredicted RBP6.57□□□□□ -1.36
VPS39-207ENST00000563692 SMIM6P0DI80 62 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 SMIM17P0DL12 118 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 RAB4AP20338 218 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 PMCHP20382 165 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 ODF3L2Q3SX64 289 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 MRPL51Q4U2R6 128 aaKnown RBP6.57□□□□□ -1.36
VPS39-207ENST00000563692 LINC00518Q8N0U6 118 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 OR10AG1Q8NH19 301 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 PRSS3P2Q8NHM4 247 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 PRELID3AQ96N28 172 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 MSRB1Q9NZV6 116 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 TP53TG3Q9ULZ0 132 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 LAMTOR2Q9Y2Q5 125 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 U3KQK5 164 aa6.57□□□□□ -1.36
VPS39-207ENST00000563692 D6R8Y8 96 aa6.56□□□□□ -1.36
VPS39-207ENST00000563692 M0R381 172 aa6.56□□□□□ -1.36
VPS39-207ENST00000563692 NUPR1O60356 82 aa6.56□□□□□ -1.36
VPS39-207ENST00000563692 INSP01308 110 aa6.56□□□□□ -1.36
VPS39-207ENST00000563692 RNASE3P12724 160 aaKnown RBP6.56□□□□□ -1.36
VPS39-207ENST00000563692 FXYD7P58549 80 aa6.56□□□□□ -1.36
VPS39-207ENST00000563692 IQCJQ1A5X6 159 aa6.56□□□□□ -1.36
VPS39-207ENST00000563692 LINC01587Q99440 93 aa6.56□□□□□ -1.36
VPS39-207ENST00000563692 DPH3P1Q9H4G8 78 aa6.56□□□□□ -1.36
VPS39-207ENST00000563692 IGHV3-16A0A0C4DH30 117 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 CRXO43186 299 aaPredicted RBP6.55□□□□□ -1.36
VPS39-207ENST00000563692 PPP1R17O96001 155 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 EVI2AP22794 236 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 AMTP48728 403 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 ZNF124Q15973 351 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 RNASEKQ6P5S7 137 aaKnown RBP6.55□□□□□ -1.36
VPS39-207ENST00000563692 MORN3Q6PF18 240 aaPredicted RBP6.55□□□□□ -1.36
VPS39-207ENST00000563692 FA2HQ7L5A8 372 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 TRPT1Q86TN4 253 aaKnown RBP6.55□□□□□ -1.36
VPS39-207ENST00000563692 GTSCR1Q86UQ5 136 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 Q8N1Y9 231 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 MRAP2Q96G30 205 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 AP1S3Q96PC3 154 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 C12orf57Q99622 126 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 LINC00467Q9BRT7 94 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 TMEM208Q9BTX3 173 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 C1QTNF4Q9BXJ3 329 aa6.55□□□□□ -1.36
VPS39-207ENST00000563692 RBMY1BA6NDE4 496 aaKnown RBP6.54□□□□□ -1.36
VPS39-207ENST00000563692 RBMY1EA6NEQ0 496 aaKnown RBP6.54□□□□□ -1.36
VPS39-207ENST00000563692 RBMY1DP0C7P1 496 aaKnown RBP6.54□□□□□ -1.36
VPS39-207ENST00000563692 RNF185Q96GF1 192 aa6.54□□□□□ -1.36
VPS39-207ENST00000563692 C9orf85Q96MD7 179 aa6.54□□□□□ -1.36
VPS39-207ENST00000563692 WWC2-AS2Q96NR7 200 aa6.54□□□□□ -1.36
VPS39-207ENST00000563692 RCHY1Q96PM5 261 aa6.54□□□□□ -1.36
VPS39-207ENST00000563692 MAP1LC3AQ9H492 121 aa6.54□□□□□ -1.36
VPS39-207ENST00000563692 MDFICQ9P1T7 246 aa6.54□□□□□ -1.36
VPS39-207ENST00000563692 LOC389332A0A1B0GUA5 103 aa6.53□□□□□ -1.36
VPS39-207ENST00000563692 NXPH4O95158 308 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms