RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 ZNF876PQ49A33 203 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 SCGB2B2Q4G0G5 96 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 KRTAP5-4Q6L8H1 288 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 NOTCH2NLQ7Z3S9 236 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 ZNF546Q86UE3 836 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 NIT1Q86X76 327 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 TMEM183AQ8IXX5 376 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 ZNF664Q8N3J9 261 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 ZFAND2AQ8N6M9 145 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 CYB561D1Q8N8Q1 229 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 Q8TAT8 98 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 SPACA4Q8TDM5 124 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 AGPAT4-IT1Q9H0P7 198 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 PLAC8Q9NZF1 115 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 PSORS1C2Q9UIG4 136 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 KLK12Q9UKR0 248 aa2.55□□□□□ -2
SNHG1-220ENST00000544550 STRAPQ9Y3F4 350 aaKnown RBP2.55□□□□□ -2
SNHG1-220ENST00000544550 TRBV19A0A075B6N1 114 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 IGHV3-16A0A0C4DH30 117 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 LOC100506127A0A0U1RQW1 187 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 C5orf51A6NDU8 294 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 FNDC10F2Z333 226 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 H3BTX0 84 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 H7C1H1 209 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 GOSR2O14653 212 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 SYNGR2O43760 224 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 COX7A2P2O60397 106 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 NOL3O60936 208 aaKnown RBP2.54□□□□□ -2
SNHG1-220ENST00000544550 HLA-DQA1P01909 254 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 CD3DP04234 171 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 SNRPCP09234 159 aaKnown RBP2.54□□□□□ -2
SNHG1-220ENST00000544550 CFC1BP0CG36 223 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 CFC1P0CG37 223 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 SLC25A6P12236 298 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 INPP1P49441 399 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 TAS2R19P59542 299 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 CNBPP62633 177 aaKnown RBP2.54□□□□□ -2
SNHG1-220ENST00000544550 PDE6HQ13956 83 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 ZNF266Q14584 549 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 PRR4Q16378 134 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 SPANXN5Q5MJ07 72 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 MUC21Q5SSG8 566 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 C10orf113Q5VZT2 155 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 PATE2Q6UY27 113 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 Q6ZQT7 251 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 COX8CQ7Z4L0 72 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 LYZL2Q7Z4W2 148 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 SNX29P2Q8IUI4 249 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 C12orf45Q8N5I9 185 aaPredicted RBP2.54□□□□□ -2
SNHG1-220ENST00000544550 ARL6IP6Q8N6S5 226 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 GTSF1Q8WW33 167 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 SCGB3A2Q96PL1 93 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 LITAFQ99732 161 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 RTBDNQ9BSG5 229 aaPredicted RBP2.54□□□□□ -2
SNHG1-220ENST00000544550 NPVFQ9HCQ7 196 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 ZNF492Q9P255 531 aa2.54□□□□□ -2
SNHG1-220ENST00000544550 A0A087X002 238 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 DISC1C4P0D8 188 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 H3BQ15 152 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 M0R3E3 92 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 RAB3DO95716 219 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 APOA1P02647 267 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 ZNF138P52744 262 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 GABARAPL2P60520 117 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 PKIAP61925 76 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 CACNG7P62955 275 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 ADAMTSL4-AS1Q5T5F5 129 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 PRR9Q5T870 116 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 CFAP126Q5VTH2 177 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 Q6AWC8 147 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 CD164L2Q6UWJ8 174 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 Q6ZRG5 221 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 Q6ZRP5 223 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 TMEM229BQ8NBD8 167 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 OR1L4Q8NGR5 311 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 C15orf40Q8WUR7 153 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 PFDN5Q99471 154 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 PYGO1Q9Y3Y4 419 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 TIMM9Q9Y5J7 89 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 LENEPQ9Y5L5 61 aa2.53□□□□□ -2
SNHG1-220ENST00000544550 IGKV2-40A0A087WW87 121 aaPredicted RBP2.52□□□□□ -2.01
SNHG1-220ENST00000544550 AGPAT2O15120 278 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 IGKV2D-40P01614 121 aaPredicted RBP2.52□□□□□ -2.01
SNHG1-220ENST00000544550 LINC00694P0DN24 101 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 CSN1S1P47710 185 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 SSTP61278 116 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 RRAS2P62070 204 aaPredicted RBP2.52□□□□□ -2.01
SNHG1-220ENST00000544550 SSBP1Q04837 148 aaKnown RBP2.52□□□□□ -2.01
SNHG1-220ENST00000544550 SLC38A11Q08AI6 406 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 MIAQ16674 131 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 DYNC2LI1Q8TCX1 351 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 KCNS1Q96KK3 526 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 DNAJC30Q96LL9 226 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 FAM218AQ96MZ4 157 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 PRRT1Q99946 306 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 GGACTQ9BVM4 153 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 GPN1Q9HCN4 374 aaPredicted RBP2.52□□□□□ -2.01
SNHG1-220ENST00000544550 TMEM14CQ9P0S9 112 aa2.52□□□□□ -2.01
SNHG1-220ENST00000544550 COMMD3Q9UBI1 195 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 189.7 ms