RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	HIGD1B	Q9P298	99 aa		11.24	□□□□□ -0.61
DDX55-209	ENST00000542286	AGRN	O00468	2067 aa		11.24	□□□□□ -0.61
DDX55-209	ENST00000542286		H3BMG7	143 aa		11.24	□□□□□ -0.61
DDX55-209	ENST00000542286	C19orf54	Q5BKX5	351 aa		11.24	□□□□□ -0.61
DDX55-209	ENST00000542286	DEFB104A	Q8WTQ1	72 aa		11.24	□□□□□ -0.61
DDX55-209	ENST00000542286		E9PLD3	99 aa		11.23	□□□□□ -0.61
DDX55-209	ENST00000542286	TMEM78	Q5T7P6	136 aa		11.23	□□□□□ -0.61
DDX55-209	ENST00000542286	NIPBL	Q6KC79	2804 aa	eCLIP	11.23	□□□□□ -0.61
DDX55-209	ENST00000542286	TRAV26-1	A0A087WT03	109 aa		11.23	□□□□□ -0.61
DDX55-209	ENST00000542286	HIST2H2BD	Q6DRA6	164 aa		11.23	□□□□□ -0.61
DDX55-209	ENST00000542286	HHLA3	Q9XRX5	114 aa		11.23	□□□□□ -0.61
DDX55-209	ENST00000542286	UFC1	Q9Y3C8	167 aa		11.23	□□□□□ -0.61
DDX55-209	ENST00000542286	TRBV25-1	A0A075B6N4	114 aa		11.22	□□□□□ -0.61
DDX55-209	ENST00000542286	MSMB	P08118	114 aa		11.22	□□□□□ -0.61
DDX55-209	ENST00000542286	IGLL5	B9A064	214 aa		11.22	□□□□□ -0.61
DDX55-209	ENST00000542286	COX8C	Q7Z4L0	72 aa		11.22	□□□□□ -0.61
DDX55-209	ENST00000542286	UBR5	O95071	2799 aa	Predicted RBP	11.22	□□□□□ -0.61
DDX55-209	ENST00000542286		H3BVH4	76 aa		11.22	□□□□□ -0.61
DDX55-209	ENST00000542286	AMTN	Q6UX39	209 aa		11.22	□□□□□ -0.61
DDX55-209	ENST00000542286	CEND1	Q8N111	149 aa		11.22	□□□□□ -0.61
DDX55-209	ENST00000542286	MTURN	Q8N3F0	131 aa		11.22	□□□□□ -0.61
DDX55-209	ENST00000542286	TM2D2	Q9BX73	214 aa		11.22	□□□□□ -0.61
DDX55-209	ENST00000542286	APC	P25054	2843 aa		11.21	□□□□□ -0.61
DDX55-209	ENST00000542286	IGHV4-59	P01825	116 aa		11.21	□□□□□ -0.61
DDX55-209	ENST00000542286	INSL3	P51460	131 aa		11.21	□□□□□ -0.61
DDX55-209	ENST00000542286	ZNF479	Q96JC4	524 aa		11.21	□□□□□ -0.61
DDX55-209	ENST00000542286	SLC50A1	Q9BRV3	221 aa		11.21	□□□□□ -0.61
DDX55-209	ENST00000542286		U3KQE9	123 aa		11.21	□□□□□ -0.61
DDX55-209	ENST00000542286	CRYBA4	P53673	196 aa		11.21	□□□□□ -0.62
DDX55-209	ENST00000542286	GTSCR1	Q86UQ5	136 aa		11.21	□□□□□ -0.62
DDX55-209	ENST00000542286	BBC3	Q96PG8	261 aa	Predicted RBP	11.2	□□□□□ -0.62
DDX55-209	ENST00000542286		A6NDX4	124 aa		11.2	□□□□□ -0.62
DDX55-209	ENST00000542286	PRSS1	P07477	247 aa		11.2	□□□□□ -0.62
DDX55-209	ENST00000542286	ODF1	Q14990	250 aa		11.2	□□□□□ -0.62
DDX55-209	ENST00000542286	LINC01559	Q495D7	138 aa		11.2	□□□□□ -0.62
DDX55-209	ENST00000542286	IGHV7-4-1	A0A0J9YVY3	117 aa		11.19	□□□□□ -0.62
DDX55-209	ENST00000542286	TCTEX1D4	Q5JR98	221 aa		11.19	□□□□□ -0.62
DDX55-209	ENST00000542286	ZMAT4	Q9H898	229 aa		11.19	□□□□□ -0.62
DDX55-209	ENST00000542286	GAGE13	Q4V321	117 aa		11.19	□□□□□ -0.62
DDX55-209	ENST00000542286	CHD6	Q8TD26	2715 aa		11.19	□□□□□ -0.62
DDX55-209	ENST00000542286	TNFRSF6B	O95407	300 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	IGHG2	P01859	326 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	KLK9	Q2XQG4	91 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	PSMG4	Q5JS54	123 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	DUX5	Q96PT3	197 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	KLK9	Q9UKQ9	250 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	FAM223B	A6NKX1	122 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286		M0R381	172 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	IGKC	P01834	107 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	LEP	P41159	167 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	DEFB112	Q30KQ8	113 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	FAM223A	Q8IWN6	122 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	MRAP2	Q96G30	205 aa		11.18	□□□□□ -0.62
DDX55-209	ENST00000542286	NOTCH3	Q9UM47	2321 aa		11.17	□□□□□ -0.62
DDX55-209	ENST00000542286	C12orf74	Q32Q52	190 aa		11.17	□□□□□ -0.62
DDX55-209	ENST00000542286	ZC2HC1B	Q5TFG8	222 aa		11.17	□□□□□ -0.62
DDX55-209	ENST00000542286	GEMIN7	Q9H840	131 aa	Known RBP	11.17	□□□□□ -0.62
DDX55-209	ENST00000542286	ACAN	P16112	2415 aa		11.17	□□□□□ -0.62
DDX55-209	ENST00000542286	WNK1	Q9H4A3	2382 aa		11.17	□□□□□ -0.62
DDX55-209	ENST00000542286	AKAP9	Q99996	3911 aa		11.17	□□□□□ -0.62
DDX55-209	ENST00000542286	KRTAP10-9	P60411	292 aa		11.17	□□□□□ -0.62
DDX55-209	ENST00000542286	RHPN1-AS1	Q9BWJ2	59 aa		11.17	□□□□□ -0.62
DDX55-209	ENST00000542286	SPANXN1	Q5VSR9	72 aa		11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	IGKV3-20	P01619	116 aa		11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	RNASE4	P34096	147 aa	Known RBP	11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	C20orf78	Q9BR46	151 aa		11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	RBAKDN	A6NC62	111 aa		11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	GNRH2	O43555	120 aa		11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	SRSF1	Q07955	248 aa	Known RBP eCLIP	11.16	□□□□□ -0.62	9e-8	■■■□□ 16.2
DDX55-209	ENST00000542286	C9orf47	Q6ZRZ4	202 aa		11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	MAPKAPK5-AS1	Q8N8E1	139 aa		11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	FOXC2	Q99958	501 aa		11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	PRO0461	Q9UI25	63 aa		11.16	□□□□□ -0.62
DDX55-209	ENST00000542286	PRRC2A	P48634	2157 aa	Known RBP	11.15	□□□□□ -0.62
DDX55-209	ENST00000542286	ITPR3	Q14573	2671 aa		11.15	□□□□□ -0.62
DDX55-209	ENST00000542286		A0A1B0GWB2	263 aa		11.15	□□□□□ -0.62
DDX55-209	ENST00000542286	TMEM8B	A6NDV4	472 aa		11.15	□□□□□ -0.62
DDX55-209	ENST00000542286	TGFA	P01135	160 aa		11.15	□□□□□ -0.62
DDX55-209	ENST00000542286	ZFAND2A	Q8N6M9	145 aa		11.15	□□□□□ -0.62
DDX55-209	ENST00000542286	MAP1LC3A	Q9H492	121 aa		11.15	□□□□□ -0.62
DDX55-209	ENST00000542286	MUC4	Q99102	2169 aa		11.15	□□□□□ -0.62
DDX55-209	ENST00000542286	FCER1G	P30273	86 aa		11.15	□□□□□ -0.63
DDX55-209	ENST00000542286	CNFN	Q9BYD5	112 aa		11.15	□□□□□ -0.63
DDX55-209	ENST00000542286	TMEM160	Q9NX00	188 aa		11.15	□□□□□ -0.63
DDX55-209	ENST00000542286	TENM4	Q6N022	2769 aa		11.14	□□□□□ -0.63
DDX55-209	ENST00000542286	MTOR	P42345	2549 aa		11.14	□□□□□ -0.63
DDX55-209	ENST00000542286	NDUFA4	O00483	81 aa		11.14	□□□□□ -0.63
DDX55-209	ENST00000542286	SOCS3	O14543	225 aa		11.14	□□□□□ -0.63
DDX55-209	ENST00000542286	DPM2	O94777	84 aa		11.14	□□□□□ -0.63
DDX55-209	ENST00000542286	MRPL16	Q9NX20	251 aa	Known RBP	11.14	□□□□□ -0.63
DDX55-209	ENST00000542286	TMEM158	Q8WZ71	300 aa		11.14	□□□□□ -0.63
DDX55-209	ENST00000542286	FLNA	P21333	2647 aa	Known RBP	11.13	□□□□□ -0.63
DDX55-209	ENST00000542286		B4DSR2	109 aa		11.13	□□□□□ -0.63
DDX55-209	ENST00000542286	ANXA2R	Q3ZCQ2	193 aa		11.13	□□□□□ -0.63
DDX55-209	ENST00000542286	RNF223	E7ERA6	249 aa		11.13	□□□□□ -0.63
DDX55-209	ENST00000542286	APOM	O95445	188 aa		11.13	□□□□□ -0.63
DDX55-209	ENST00000542286	RRN3P1	Q2M238	152 aa		11.13	□□□□□ -0.63
DDX55-209	ENST00000542286	C9orf139	Q6ZV77	190 aa		11.13	□□□□□ -0.63
DDX55-209	ENST00000542286	C14orf178	Q8N769	122 aa	Predicted RBP	11.13	□□□□□ -0.63
DDX55-209	ENST00000542286	TMEM190	Q8WZ59	177 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms