RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 FBXL15Q9H469 300 aa8.03□□□□□ -1.12
CHFR-219ENST00000541341 NHP2Q9NX24 153 aaKnown RBP8.03□□□□□ -1.12
CHFR-219ENST00000541341 IGLV11-55A0A075B6I3 123 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 TMEM213A2RRL7 107 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 LY6LH3BQJ8 138 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 M0R381 172 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 EGR2P11161 476 aaPredicted RBP8.02□□□□□ -1.13
CHFR-219ENST00000541341 KLRD1Q13241 179 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 KLK9Q2XQG4 91 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 TMEM78Q5T7P6 136 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 PCP2Q8IVA1 136 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 PHLDA1Q8WV24 401 aaPredicted RBP8.02□□□□□ -1.13
CHFR-219ENST00000541341 TPSG1Q9NRR2 321 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 KLK9Q9UKQ9 250 aa8.02□□□□□ -1.13
CHFR-219ENST00000541341 IGHV3OR16-10A0A075B7F0 116 aa8.01□□□□□ -1.13
CHFR-219ENST00000541341 IGHV1-69DA0A0B4J2H0 117 aa8.01□□□□□ -1.13
CHFR-219ENST00000541341 TRBV7-9A0A0J9YWB2 115 aa8.01□□□□□ -1.13
CHFR-219ENST00000541341 MYMXA0A1B0GTQ4 84 aa8.01□□□□□ -1.13
CHFR-219ENST00000541341 H3BTX0 84 aa8.01□□□□□ -1.13
CHFR-219ENST00000541341 MINOS1Q5TGZ0 78 aa8.01□□□□□ -1.13
CHFR-219ENST00000541341 C8orf49Q96NF6 230 aa8.01□□□□□ -1.13
CHFR-219ENST00000541341 MCRIP2Q9BUT9 160 aaKnown RBP8.01□□□□□ -1.13
CHFR-219ENST00000541341 DKK2Q9UBU2 259 aa8.01□□□□□ -1.13
CHFR-219ENST00000541341 MINOS1-NBL1R4GNA1 71 aa8.01□□□□□ -1.13
CHFR-219ENST00000541341 TRRAPQ9Y4A5 3859 aa8□□□□□ -1.13
CHFR-219ENST00000541341 FXYD2P54710 66 aa8□□□□□ -1.13
CHFR-219ENST00000541341 RPL32P62910 135 aaKnown RBP8□□□□□ -1.13
CHFR-219ENST00000541341 C5orf64Q2M2E5 130 aa8□□□□□ -1.13
CHFR-219ENST00000541341 PIP4P2Q8N4L2 257 aa8□□□□□ -1.13
CHFR-219ENST00000541341 LY6G5BQ8NDX9 201 aa8□□□□□ -1.13
CHFR-219ENST00000541341 RNF185Q96GF1 192 aa8□□□□□ -1.13
CHFR-219ENST00000541341 TGP01266 2768 aa7.99□□□□□ -1.13
CHFR-219ENST00000541341 APOMO95445 188 aa7.99□□□□□ -1.13
CHFR-219ENST00000541341 ZFP36P26651 326 aaKnown RBP7.99□□□□□ -1.13
CHFR-219ENST00000541341 CKS1BP61024 79 aa7.99□□□□□ -1.13
CHFR-219ENST00000541341 DIAPH2-AS1Q14236 149 aa7.99□□□□□ -1.13
CHFR-219ENST00000541341 PPDPFLQ8WWR9 84 aa7.99□□□□□ -1.13
CHFR-219ENST00000541341 C1QTNF4Q9BXJ3 329 aa7.99□□□□□ -1.13
CHFR-219ENST00000541341 ZNRD1Q9P1U0 126 aa7.99□□□□□ -1.13
CHFR-219ENST00000541341 TSSC4Q9Y5U2 329 aaPredicted RBP7.99□□□□□ -1.13
CHFR-219ENST00000541341 TMSB15BA0A087X1C1 80 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 IGHV3-72A0A0B4J1Y9 119 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 CENPVL3A0A0U1RRI6 287 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 DNAJC9-AS1A6NH13 148 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 FAM106CPP0CH98 169 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 SMAGPQ0VAQ4 97 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 FAM106AQ4KMX7 169 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 ASPHD1Q5U4P2 390 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 SPANXN1Q5VSR9 72 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 C18orf15Q96N68 181 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 TP73-AS1Q9UF72 201 aa7.98□□□□□ -1.13
CHFR-219ENST00000541341 IGLV2-18A0A075B6J9 118 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 TRBV7-3A0A075B6L6 115 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 TRBV7-1A0A0A6YYK4 115 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 IGHV3-21A0A0B4J1V1 117 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 TRAV40A0A0B4J280 105 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 M0R3E3 92 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 ASIPP42127 132 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 FOXI1Q12951 378 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 EBI3Q14213 229 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 C9orf47Q6ZRZ4 202 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 GTSCR1Q86UQ5 136 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 GLMPQ8WWB7 406 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 TOMM6Q96B49 74 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 TMEM141Q96I45 108 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 LINC00477Q96M19 166 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 C17orf77Q96MU5 243 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 SCGB3A1Q96QR1 104 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 SMIM2Q9BVW6 85 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 GTSF1LQ9H1H1 148 aa7.97□□□□□ -1.13
CHFR-219ENST00000541341 OVOL1O14753 267 aa7.96□□□□□ -1.14
CHFR-219ENST00000541341 TIMM23O14925 209 aa7.96□□□□□ -1.14
CHFR-219ENST00000541341 GATA3P23771 443 aa7.96□□□□□ -1.14
CHFR-219ENST00000541341 PRTN3P24158 256 aa7.96□□□□□ -1.14
CHFR-219ENST00000541341 SRSF9Q13242 221 aaKnown RBP eCLIP7.96□□□□□ -1.14
CHFR-219ENST00000541341 FAM110DQ8TAY7 271 aaPredicted RBP7.96□□□□□ -1.14
CHFR-219ENST00000541341 METTL26Q96S19 204 aa7.96□□□□□ -1.14
CHFR-219ENST00000541341 DPH3P1Q9H4G8 78 aa7.96□□□□□ -1.14
CHFR-219ENST00000541341 MRPL35Q9NZE8 188 aaKnown RBP7.96□□□□□ -1.14
CHFR-219ENST00000541341 IGKV2-40A0A087WW87 121 aaPredicted RBP7.95□□□□□ -1.14
CHFR-219ENST00000541341 J3QLI3 93 aa7.95□□□□□ -1.14
CHFR-219ENST00000541341 FSHBP01225 129 aa7.95□□□□□ -1.14
CHFR-219ENST00000541341 IGKV2D-40P01614 121 aaPredicted RBP7.95□□□□□ -1.14
CHFR-219ENST00000541341 CNTFRP26992 372 aa7.95□□□□□ -1.14
CHFR-219ENST00000541341 CRYBA4P53673 196 aa7.95□□□□□ -1.14
CHFR-219ENST00000541341 PRR31Q5SQ13 230 aa7.95□□□□□ -1.14
CHFR-219ENST00000541341 SCGB1D4Q6XE38 83 aa7.95□□□□□ -1.14
CHFR-219ENST00000541341 C9orf139Q6ZV77 190 aa7.95□□□□□ -1.14
CHFR-219ENST00000541341 EEF1AKMT3Q96AZ1 226 aa7.95□□□□□ -1.14
CHFR-219ENST00000541341 FANCD2OSQ96PS1 177 aa7.95□□□□□ -1.14
CHFR-219ENST00000541341 SPAG8Q99932 426 aaPredicted RBP7.95□□□□□ -1.14
CHFR-219ENST00000541341 IGKV2D-26A0A0A0MRZ7 120 aa7.94□□□□□ -1.14
CHFR-219ENST00000541341 TRAV21A0A0B4J279 112 aa7.94□□□□□ -1.14
CHFR-219ENST00000541341 A8MWV9 139 aa7.94□□□□□ -1.14
CHFR-219ENST00000541341 CTSGP08311 255 aa7.94□□□□□ -1.14
CHFR-219ENST00000541341 IGHV4-38-2P0DP08 117 aa7.94□□□□□ -1.14
CHFR-219ENST00000541341 SUMO2P61956 95 aaKnown RBP7.94□□□□□ -1.14
CHFR-219ENST00000541341 HES1Q14469 280 aa7.94□□□□□ -1.14
CHFR-219ENST00000541341 WFDC2Q14508 124 aa7.94□□□□□ -1.14
CHFR-219ENST00000541341 ETDBQ3ZM63 59 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms