RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 PRR20CP86479 221 aa7.82□□□□□ -1.16
COL4A6-208ENST00000538570 PRR20DP86480 221 aa7.82□□□□□ -1.16
COL4A6-208ENST00000538570 PRR20BP86481 221 aa7.82□□□□□ -1.16
COL4A6-208ENST00000538570 PRR20AP86496 221 aa7.82□□□□□ -1.16
COL4A6-208ENST00000538570 DIAPH2-AS1Q14236 149 aa7.82□□□□□ -1.16
COL4A6-208ENST00000538570 LOXL1Q08397 574 aaPredicted RBP7.82□□□□□ -1.16
COL4A6-208ENST00000538570 LINC00173Q6ZV60 143 aa7.82□□□□□ -1.16
COL4A6-208ENST00000538570 C17orf77Q96MU5 243 aa7.82□□□□□ -1.16
COL4A6-208ENST00000538570 THSD7BQ9C0I4 1608 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 FOXE3Q13461 319 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 MP68P56378 58 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 LINC01620Q4KN68 170 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 ZMAT4Q9H898 229 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 A0A0J9YY99 117 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 C20orf197Q8N268 126 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 RLFQ13129 1914 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 Q6ZQT7 251 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 IGLV1-44P01699 117 aa7.81□□□□□ -1.16
COL4A6-208ENST00000538570 TRAV4A0A0B4J268 109 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 ETDCA0A1B0GVM5 59 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 ODF1Q14990 250 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 LENEPQ9Y5L5 61 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 TRBV12-3P01733 135 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 ICOSQ9Y6W8 199 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 PHF3Q92576 2039 aaKnown RBP7.8□□□□□ -1.16
COL4A6-208ENST00000538570 ZNF503-AS2A6NEH8 195 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 RPL18AQ02543 176 aaKnown RBP7.8□□□□□ -1.16
COL4A6-208ENST00000538570 IGLC6P0CF74 106 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 SHISA2Q6UWI4 295 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 IGFL3Q6UXB1 125 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 IGFBPL1Q8WX77 278 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 AGPAT4-IT1Q9H0P7 198 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 PROK2Q9HC23 129 aa7.8□□□□□ -1.16
COL4A6-208ENST00000538570 IGHV4-4A0A075B6R2 117 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 ROS1P08922 2347 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 CACNA1HO95180 2353 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 DKK4Q9UBT3 224 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 TRAV23DV6A0A075B6W5 121 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 TRBV10-2A0A0K0K1G8 114 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 HOXB4P17483 251 aaPredicted RBP7.79□□□□□ -1.16
COL4A6-208ENST00000538570 LINC00643Q86TS7 51 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 NBASA2RRP1 2371 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 MED12Q93074 2177 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 ANK1P16157 1881 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 SBF1O95248 1867 aa7.79□□□□□ -1.16
COL4A6-208ENST00000538570 SPTAN1Q13813 2472 aaKnown RBP7.79□□□□□ -1.16
COL4A6-208ENST00000538570 H0YGX0 51 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 PMAIP1Q13794 54 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 C5orf38Q86SI9 138 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 KAAG1Q9UBP8 84 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 Q9HAA7 133 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 HIGD1BQ9P298 99 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 H3BQ85 93 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 ZFP2Q6ZN57 461 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 VPREB3Q9UKI3 123 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 ARTNQ5T4W7 220 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 COX7B2Q8TF08 81 aa7.78□□□□□ -1.16
COL4A6-208ENST00000538570 COL6A6A6NMZ7 2263 aa7.77□□□□□ -1.17
COL4A6-208ENST00000538570 IGHV4-28A0A0C4DH34 117 aa7.77□□□□□ -1.17
COL4A6-208ENST00000538570 ZNF503Q96F45 646 aa7.77□□□□□ -1.17
COL4A6-208ENST00000538570 CAMK2N2Q96S95 79 aa7.77□□□□□ -1.17
COL4A6-208ENST00000538570 SND1-IT1Q9HBX3 110 aa7.77□□□□□ -1.17
COL4A6-208ENST00000538570 SIP14410 1827 aa7.77□□□□□ -1.17
COL4A6-208ENST00000538570 K7EQD1 137 aa7.77□□□□□ -1.17
COL4A6-208ENST00000538570 NDUFB1O75438 58 aa7.77□□□□□ -1.17
COL4A6-208ENST00000538570 GATA1P15976 413 aaPredicted RBP7.77□□□□□ -1.17
COL4A6-208ENST00000538570 RPL39LQ96EH5 51 aaKnown RBP7.77□□□□□ -1.17
COL4A6-208ENST00000538570 FAM19A5Q7Z5A7 132 aaPredicted RBP7.77□□□□□ -1.17
COL4A6-208ENST00000538570 ARFGEF3Q5TH69 2177 aa7.77□□□□□ -1.17
COL4A6-208ENST00000538570 CCL24O00175 119 aa7.76□□□□□ -1.17
COL4A6-208ENST00000538570 C16orf74Q96GX8 76 aa7.76□□□□□ -1.17
COL4A6-208ENST00000538570 VWA8A3KMH1 1905 aa7.76□□□□□ -1.17
COL4A6-208ENST00000538570 TIRAPP58753 221 aa7.76□□□□□ -1.17
COL4A6-208ENST00000538570 VSIG2Q96IQ7 327 aa7.76□□□□□ -1.17
COL4A6-208ENST00000538570 IL15RAQ13261 267 aa7.76□□□□□ -1.17
COL4A6-208ENST00000538570 COX7A2LO14548 114 aa7.76□□□□□ -1.17
COL4A6-208ENST00000538570 DAZ2Q13117 558 aaKnown RBP7.76□□□□□ -1.17
COL4A6-208ENST00000538570 RSPO1Q2MKA7 263 aaPredicted RBP7.76□□□□□ -1.17
COL4A6-208ENST00000538570 DAZ4Q86SG3 579 aaKnown RBP7.76□□□□□ -1.17
COL4A6-208ENST00000538570 OPRPNQ99935 248 aaPredicted RBP7.76□□□□□ -1.17
COL4A6-208ENST00000538570 DAZ3Q9NR90 486 aaKnown RBP7.76□□□□□ -1.17
COL4A6-208ENST00000538570 WISP1O95388 367 aa7.76□□□□□ -1.17
COL4A6-208ENST00000538570 IGLV3-1P01715 115 aa7.76□□□□□ -1.17
COL4A6-208ENST00000538570 KMT2EQ8IZD2 1858 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 A6NED7 52 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 ATP5EP56381 51 aaPredicted RBP7.75□□□□□ -1.17
COL4A6-208ENST00000538570 HIST2H2BCQ6DN03 193 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 DIDO1Q9BTC0 2240 aaKnown RBP7.75□□□□□ -1.17
COL4A6-208ENST00000538570 POLEQ07864 2286 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 DEFB112Q30KQ8 113 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 PLXNA3P51805 1871 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 TNRC6AQ8NDV7 1962 aaKnown RBP7.75□□□□□ -1.17
COL4A6-208ENST00000538570 IGLV2-23P01705 113 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 GYPEP15421 78 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 SDIM1Q6ZPB5 146 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 MRPL36Q9P0J6 103 aaKnown RBP7.75□□□□□ -1.17
COL4A6-208ENST00000538570 NREPQ16612 68 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 UPK3BQ9BT76 320 aa7.75□□□□□ -1.17
COL4A6-208ENST00000538570 SPRY2O43597 315 aa7.74□□□□□ -1.17
COL4A6-208ENST00000538570 PROP1O75360 226 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms