RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CXCL1P09341 107 aa10.64□□□□□ -0.71
NUP54-213ENST00000513352 PHLDA3Q9Y5J5 127 aa10.64□□□□□ -0.71
NUP54-213ENST00000513352 MUC4Q99102 2169 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 TRAV10A0A0B4J240 114 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 IGHV3-53P01767 116 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 LGALS9BQ3B8N2 356 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 ZNF876PQ49A33 203 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 DNLZQ5SXM8 178 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 FAM231DQ6ZW35 169 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 FER1L6-AS1Q8NA97 138 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 SYT8Q8NBV8 401 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 PHLDA1Q8WV24 401 aaPredicted RBP10.63□□□□□ -0.71
NUP54-213ENST00000513352 SFRP2Q96HF1 295 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 OSTCQ9NRP0 149 aa10.63□□□□□ -0.71
NUP54-213ENST00000513352 DEFB131BA0A096LNP1 70 aa10.62□□□□□ -0.71
NUP54-213ENST00000513352 MUC21A0A0G2JKD1 596 aa10.62□□□□□ -0.71
NUP54-213ENST00000513352 MUC21A0A140T8X8 626 aa10.62□□□□□ -0.71
NUP54-213ENST00000513352 M0R381 172 aa10.62□□□□□ -0.71
NUP54-213ENST00000513352 ATP5G1P05496 136 aa10.62□□□□□ -0.71
NUP54-213ENST00000513352 MED14OSP0DP75 135 aa10.62□□□□□ -0.71
NUP54-213ENST00000513352 SSTP61278 116 aa10.62□□□□□ -0.71
NUP54-213ENST00000513352 OR10G8Q8NGN5 311 aa10.62□□□□□ -0.71
NUP54-213ENST00000513352 A8MWL6 223 aa10.61□□□□□ -0.71
NUP54-213ENST00000513352 ADCYAP1P18509 176 aa10.61□□□□□ -0.71
NUP54-213ENST00000513352 PNRC1Q12796 327 aaPredicted RBP10.61□□□□□ -0.71
NUP54-213ENST00000513352 SPANXN1Q5VSR9 72 aa10.61□□□□□ -0.71
NUP54-213ENST00000513352 ZNF575Q86XF7 245 aa10.61□□□□□ -0.71
NUP54-213ENST00000513352 LINC00612Q8N6U2 182 aa10.61□□□□□ -0.71
NUP54-213ENST00000513352 NUPR2A6NF83 97 aa10.6□□□□□ -0.71
NUP54-213ENST00000513352 F5H768 121 aa10.6□□□□□ -0.71
NUP54-213ENST00000513352 ZFP82Q8N141 532 aa10.6□□□□□ -0.71
NUP54-213ENST00000513352 OR10AG1Q8NH19 301 aa10.6□□□□□ -0.71
NUP54-213ENST00000513352 RASL10AQ92737 203 aa10.6□□□□□ -0.71
NUP54-213ENST00000513352 SEC11CQ9BY50 192 aa10.6□□□□□ -0.71
NUP54-213ENST00000513352 A0A1W2PPQ1 181 aa10.59□□□□□ -0.71
NUP54-213ENST00000513352 SNAI2O43623 268 aa10.59□□□□□ -0.71
NUP54-213ENST00000513352 OR5AL1P0C617 328 aa10.59□□□□□ -0.71
NUP54-213ENST00000513352 LYZL1Q6UWQ5 148 aa10.59□□□□□ -0.71
NUP54-213ENST00000513352 OR4C5Q8NGB2 326 aa10.59□□□□□ -0.71
NUP54-213ENST00000513352 SCRT2Q9NQ03 307 aa10.59□□□□□ -0.71
NUP54-213ENST00000513352 TRAV4A0A0B4J268 109 aa10.58□□□□□ -0.72
NUP54-213ENST00000513352 TRGV4A0A0C4DH28 118 aa10.58□□□□□ -0.72
NUP54-213ENST00000513352 IGLC6P0CF74 106 aa10.58□□□□□ -0.72
NUP54-213ENST00000513352 CT83Q5H943 113 aa10.58□□□□□ -0.72
NUP54-213ENST00000513352 CEMP1Q6PRD7 247 aaPredicted RBP10.58□□□□□ -0.72
NUP54-213ENST00000513352 PTH2Q96A98 100 aa10.58□□□□□ -0.72
NUP54-213ENST00000513352 PGLYRP4Q96LB8 373 aa10.58□□□□□ -0.72
NUP54-213ENST00000513352 KLK5Q9Y337 293 aaPredicted RBP10.58□□□□□ -0.72
NUP54-213ENST00000513352 V9GYV3 84 aa10.58□□□□□ -0.72
NUP54-213ENST00000513352 IGHV3-73A0A0B4J1V6 119 aa10.57□□□□□ -0.72
NUP54-213ENST00000513352 IGLL5B9A064 214 aa10.57□□□□□ -0.72
NUP54-213ENST00000513352 F2Z2F3 143 aa10.57□□□□□ -0.72
NUP54-213ENST00000513352 C3orf84H3BNL1 204 aa10.57□□□□□ -0.72
NUP54-213ENST00000513352 SLC7A5P1Q8MH63 180 aa10.57□□□□□ -0.72
NUP54-213ENST00000513352 TSKUQ8WUA8 353 aa10.57□□□□□ -0.72
NUP54-213ENST00000513352 BORCS7Q96B45 105 aa10.57□□□□□ -0.72
NUP54-213ENST00000513352 ZNF479Q96JC4 524 aa10.57□□□□□ -0.72
NUP54-213ENST00000513352 JPT2Q9H910 190 aa10.57□□□□□ -0.72
NUP54-213ENST00000513352 NACAE9PAV3 2078 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 A8MWV9 139 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 PPP1R2P9O14990 202 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 RS1O15537 224 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 MT-ND4LP03901 98 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 CACNG7P62955 275 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 NDUFA5Q16718 116 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 RNF212Q495C1 297 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 FAM74A4Q5TZK3 123 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 GTSF1Q8WW33 167 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 C18orf15Q96N68 181 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 NDUFAF3Q9BU61 184 aa10.56□□□□□ -0.72
NUP54-213ENST00000513352 SSBP4Q9BWG4 385 aaPredicted RBP10.56□□□□□ -0.72
NUP54-213ENST00000513352 A0A087WWL8 130 aa10.55□□□□□ -0.72
NUP54-213ENST00000513352 HIGD1CA8MV81 97 aa10.55□□□□□ -0.72
NUP54-213ENST00000513352 CTRLP40313 264 aa10.55□□□□□ -0.72
NUP54-213ENST00000513352 PIK3CD-AS1Q5SR53 167 aa10.55□□□□□ -0.72
NUP54-213ENST00000513352 CFAP126Q5VTH2 177 aa10.55□□□□□ -0.72
NUP54-213ENST00000513352 POM121L12Q8N7R1 296 aa10.55□□□□□ -0.72
NUP54-213ENST00000513352 A0A0J9YY99 117 aa10.54□□□□□ -0.72
NUP54-213ENST00000513352 NXPH4O95158 308 aa10.54□□□□□ -0.72
NUP54-213ENST00000513352 HOXA5P20719 270 aa10.54□□□□□ -0.72
NUP54-213ENST00000513352 TWIST1Q15672 202 aa10.54□□□□□ -0.72
NUP54-213ENST00000513352 TMEM88Q6PEY1 159 aa10.54□□□□□ -0.72
NUP54-213ENST00000513352 AP1S3Q96PC3 154 aa10.54□□□□□ -0.72
NUP54-213ENST00000513352 GFRA4Q9GZZ7 299 aa10.54□□□□□ -0.72
NUP54-213ENST00000513352 CARHSP1Q9Y2V2 147 aaKnown RBP10.54□□□□□ -0.72
NUP54-213ENST00000513352 IGHV4-4A0A075B6R2 117 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 TRAV26-1A0A087WT03 109 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 APOC3P02656 99 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 SMIM17P0DL12 118 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 NTF3P20783 257 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 CASC10Q5T4H9 136 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 ANAPC16Q96DE5 110 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 SAMD10Q9BYL1 202 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 MSRB1Q9NZV6 116 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 NAT8BQ9UHF3 227 aa10.53□□□□□ -0.72
NUP54-213ENST00000513352 FAM231BA6NCW3 169 aa10.52□□□□□ -0.73
NUP54-213ENST00000513352 RHODO00212 210 aa10.52□□□□□ -0.73
NUP54-213ENST00000513352 PAX4O43316 350 aa10.52□□□□□ -0.73
NUP54-213ENST00000513352 FHL2Q14192 279 aa10.52□□□□□ -0.73
NUP54-213ENST00000513352 C10orf91Q5T1B1 145 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms