RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SPRY2O43597 315 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 IL4P05112 153 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 CD69Q07108 199 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 TTC9CQ8N5M4 171 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 SPANXB1Q9NS25 103 aaPredicted RBP6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 C21orf62Q9NYP8 219 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 EBI3Q14213 229 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 ZFAND6Q6FIF0 208 aa6.7□□□□□ -1.34
LIMCH1-209ENST00000509277 SNCGO76070 127 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 TCRAP04437 139 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 EGR2P11161 476 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 GATA1P15976 413 aaPredicted RBP6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 XGP55808 180 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 TMEM75Q8N9X5 138 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 OR4X2Q8NGF9 303 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 RAX2Q96IS3 184 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 Q9H3A6 140 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 TRBV12-3P01733 135 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 RPS20P60866 119 aaKnown RBP6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 Q6ZSV7 163 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 C11orf52Q96A22 123 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 SIGLEC8Q9NYZ4 499 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 LINC01549A6NIU2 74 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 MFAP4P55083 255 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 C18orf65Q6ZTR6 163 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 NDFIP1Q9BT67 221 aa6.69□□□□□ -1.34
LIMCH1-209ENST00000509277 NACAE9PAV3 2078 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 TRBV25-1A0A075B6N4 114 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 TRBV7-9A0A0J9YWB2 115 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 TCRBV4S1A1TA0A5B7 111 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 GAGE2BQ13066 116 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 GAGE2EQ4V326 116 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 Q8TAT8 98 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 GAGE2DQ9UEU5 116 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 FSHBP01225 129 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 IGHG2P01859 326 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 HBDP02042 147 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 SMIM17P0DL12 118 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 GAGE5Q13069 117 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 GAGE6Q13070 117 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 LINC01545Q5VT33 79 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 FANCD2OSQ96PS1 177 aa6.68□□□□□ -1.34
LIMCH1-209ENST00000509277 IGLL5B9A064 214 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 FGF6P10767 208 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 HLA-DRB4P13762 266 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 KLHL30-AS1Q8NEE0 82 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 OR9G4Q8NGQ1 327 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 SLC25A2Q9BXI2 301 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 HLA-DRB4X5D2U9 266 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 CCDC179H3BU77 68 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 LYZL1Q6UWQ5 148 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 ZFP2Q6ZN57 461 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 IGF2BP2-AS1Q96M15 143 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 ZNF702PQ9H963 129 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 IGHV3-64A0A075B6Q5 118 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 K7EIM0 57 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 RS1O15537 224 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 ORMDL3Q8N138 153 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 FAM110DQ8TAY7 271 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 C17orf77Q96MU5 243 aa6.67□□□□□ -1.34
LIMCH1-209ENST00000509277 CRLF1O75462 422 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 C12orf74Q32Q52 190 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 EEF1AKMT3Q96AZ1 226 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 MSRB1Q9NZV6 116 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 FNDC10F2Z333 226 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 NPYP01303 97 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 KLF5Q13887 457 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 FOXI2Q6ZQN5 318 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 TRAV26-2A0A0B4J265 109 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 TMEM189A5PLL7 270 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 F8W1H4 67 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 PRR20EP86478 221 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 PRR20CP86479 221 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 PRR20DP86480 221 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 PRR20BP86481 221 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 PRR20AP86496 221 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 Q6ZUT4 128 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 LY96Q9Y6Y9 160 aa6.66□□□□□ -1.34
LIMCH1-209ENST00000509277 CD28P10747 220 aa6.65□□□□□ -1.34
LIMCH1-209ENST00000509277 HILS1P60008 231 aa6.65□□□□□ -1.34
LIMCH1-209ENST00000509277 MRPL35Q9NZE8 188 aaKnown RBP6.65□□□□□ -1.34
LIMCH1-209ENST00000509277 TENM1Q9UKZ4 2725 aa6.65□□□□□ -1.34
LIMCH1-209ENST00000509277 IGLV11-55A0A075B6I3 123 aa6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 OR11H12B2RN74 326 aa6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 GAS8-AS1O95177 125 aa6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 IGKCP01834 107 aa6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 OR11H1Q8NG94 326 aa6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 OR11H2Q8NH07 326 aa6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 TMEM158Q8WZ71 300 aa6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 C8orf49Q96NF6 230 aa6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 AAMDCQ9H7C9 122 aa6.65□□□□□ -1.35
LIMCH1-209ENST00000509277 I3L2K1 104 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 SYNJ2BPP57105 145 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 FOXI1Q12951 378 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 LINC01006Q8NI28 216 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 CITED2Q99967 270 aaPredicted RBP6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 C9JAW5 83 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 NPC2P61916 151 aa6.64□□□□□ -1.35
LIMCH1-209ENST00000509277 RPL32P62910 135 aaKnown RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms