RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 CFC1BP0CG36 223 aa13.43□□□□□ -0.26
NUP54-205ENST00000507257 CFC1P0CG37 223 aa13.43□□□□□ -0.26
NUP54-205ENST00000507257 SIRPDQ9H106 197 aa13.43□□□□□ -0.26
NUP54-205ENST00000507257 DUSP14O95147 198 aaKnown RBP13.42□□□□□ -0.26
NUP54-205ENST00000507257 KLHL30-AS1Q8NEE0 82 aa13.42□□□□□ -0.26
NUP54-205ENST00000507257 OR10J6PQ8NGY7 276 aa13.42□□□□□ -0.26
NUP54-205ENST00000507257 C20orf173Q96LM9 149 aa13.42□□□□□ -0.26
NUP54-205ENST00000507257 LINC01600Q96MT4 127 aa13.42□□□□□ -0.26
NUP54-205ENST00000507257 OTOGLQ3ZCN5 2332 aa13.42□□□□□ -0.26
NUP54-205ENST00000507257 IGHV3OR16-13A0A075B7E8 117 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 IGHV3-74A0A0B4J1X5 117 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 POLR2KP53803 58 aaKnown RBP13.41□□□□□ -0.26
NUP54-205ENST00000507257 LINC01560Q8TB33 94 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 PTH2Q96A98 100 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 PRO1854Q9UHT4 67 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 KIF25-AS1Q9Y6Z4 181 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 BOD1L1Q8NFC6 3051 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 SOCS3O14543 225 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 MGPP08493 103 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 ANXA2RQ3ZCQ2 193 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 AMELXQ99217 191 aa13.41□□□□□ -0.26
NUP54-205ENST00000507257 WNK2Q9Y3S1 2297 aa13.4□□□□□ -0.26
NUP54-205ENST00000507257 APC2O95996 2303 aa13.4□□□□□ -0.26
NUP54-205ENST00000507257 LINC00315P59091 139 aa13.4□□□□□ -0.26
NUP54-205ENST00000507257 WFDC12Q8WWY7 111 aa13.4□□□□□ -0.26
NUP54-205ENST00000507257 AJUBAQ96IF1 538 aa13.4□□□□□ -0.26
NUP54-205ENST00000507257 FAM223BA6NKX1 122 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 IGF1P05019 195 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 RNASE3P12724 160 aaKnown RBP13.39□□□□□ -0.27
NUP54-205ENST00000507257 UBE2E1P51965 193 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 C11orf71Q6IPW1 123 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 FAM223AQ8IWN6 122 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 DMXL2Q8TDJ6 3036 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 ASPMQ8IZT6 3477 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 IGHV3-49A0A0A0MS15 119 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 ZNF876PQ49A33 203 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 ANKRD29Q8N6D5 301 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 TP53TG1Q9Y2A0 90 aa13.39□□□□□ -0.27
NUP54-205ENST00000507257 VCYO14598 125 aa13.38□□□□□ -0.27
NUP54-205ENST00000507257 P0DMU3 169 aa13.38□□□□□ -0.27
NUP54-205ENST00000507257 FAM231AP0DMU4 169 aa13.38□□□□□ -0.27
NUP54-205ENST00000507257 FAM231CP0DMU5 169 aa13.38□□□□□ -0.27
NUP54-205ENST00000507257 Q5PR19 223 aa13.38□□□□□ -0.27
NUP54-205ENST00000507257 LY6HO94772 140 aa13.37□□□□□ -0.27
NUP54-205ENST00000507257 CRIP2P52943 208 aaPredicted RBP13.37□□□□□ -0.27
NUP54-205ENST00000507257 CITED1Q99966 193 aa13.37□□□□□ -0.27
NUP54-205ENST00000507257 A0A0B4J2C4 111 aa13.37□□□□□ -0.27
NUP54-205ENST00000507257 TRBV6-5A0A0K0K1A5 114 aa13.37□□□□□ -0.27
NUP54-205ENST00000507257 G3V318 75 aa13.37□□□□□ -0.27
NUP54-205ENST00000507257 C19orf54Q5BKX5 351 aa13.37□□□□□ -0.27
NUP54-205ENST00000507257 ZFAND6Q6FIF0 208 aa13.37□□□□□ -0.27
NUP54-205ENST00000507257 Q6ZS46 218 aa13.37□□□□□ -0.27
NUP54-205ENST00000507257 CNOT1A5YKK6 2376 aaKnown RBP13.37□□□□□ -0.27
NUP54-205ENST00000507257 SRD5A1P18405 259 aa13.36□□□□□ -0.27
NUP54-205ENST00000507257 TSPEAR-AS2P59090 65 aa13.36□□□□□ -0.27
NUP54-205ENST00000507257 KIR2DL4Q99706 377 aa13.36□□□□□ -0.27
NUP54-205ENST00000507257 J3QQQ9 107 aa13.35□□□□□ -0.27
NUP54-205ENST00000507257 SLC25A20O43772 301 aa13.35□□□□□ -0.27
NUP54-205ENST00000507257 SFTA2Q6UW10 78 aa13.35□□□□□ -0.27
NUP54-205ENST00000507257 TRBV27A0A0K0K1C4 114 aa13.35□□□□□ -0.27
NUP54-205ENST00000507257 NDUFA4O00483 81 aa13.35□□□□□ -0.27
NUP54-205ENST00000507257 IGHV1-69P01742 117 aa13.35□□□□□ -0.27
NUP54-205ENST00000507257 SCGB1C2P0DMR2 95 aa13.35□□□□□ -0.27
NUP54-205ENST00000507257 ZFP36P26651 326 aaKnown RBP13.35□□□□□ -0.27
NUP54-205ENST00000507257 RNF183Q96D59 192 aa13.35□□□□□ -0.27
NUP54-205ENST00000507257 MAP1BP46821 2468 aaKnown RBP13.34□□□□□ -0.27
NUP54-205ENST00000507257 LINC01548A6NM66 108 aa13.34□□□□□ -0.27
NUP54-205ENST00000507257 IGHV3-33P01772 117 aa13.34□□□□□ -0.27
NUP54-205ENST00000507257 TEX29Q8N6K0 151 aa13.34□□□□□ -0.27
NUP54-205ENST00000507257 C5orf56Q8N8D9 126 aa13.34□□□□□ -0.27
NUP54-205ENST00000507257 ZNRF2Q8NHG8 242 aa13.34□□□□□ -0.27
NUP54-205ENST00000507257 ADGRG4Q8IZF6 3080 aa13.34□□□□□ -0.27
NUP54-205ENST00000507257 BDP1A6H8Y1 2624 aa13.33□□□□□ -0.27
NUP54-205ENST00000507257 CACNA1HO95180 2353 aa13.33□□□□□ -0.27
NUP54-205ENST00000507257 A0A0J9YX75 114 aa13.33□□□□□ -0.28
NUP54-205ENST00000507257 PRR30Q53SZ7 412 aaPredicted RBP13.33□□□□□ -0.28
NUP54-205ENST00000507257 ANAPC13Q9BS18 74 aa13.33□□□□□ -0.28
NUP54-205ENST00000507257 LEPROTO15243 131 aa13.33□□□□□ -0.28
NUP54-205ENST00000507257 GNRH2O43555 120 aa13.33□□□□□ -0.28
NUP54-205ENST00000507257 BRI3O95415 125 aa13.33□□□□□ -0.28
NUP54-205ENST00000507257 LGALS3P17931 250 aaKnown RBP13.33□□□□□ -0.28
NUP54-205ENST00000507257 SUMO4Q6EEV6 95 aa13.33□□□□□ -0.28
NUP54-205ENST00000507257 TMEM263Q8WUH6 116 aaKnown RBP13.33□□□□□ -0.28
NUP54-205ENST00000507257 BSNQ9UPA5 3926 aa13.32□□□□□ -0.28
NUP54-205ENST00000507257 LGALS9O00182 355 aa13.32□□□□□ -0.28
NUP54-205ENST00000507257 RNASE4P34096 147 aaKnown RBP13.32□□□□□ -0.28
NUP54-205ENST00000507257 TMEM170BQ5T4T1 132 aa13.32□□□□□ -0.28
NUP54-205ENST00000507257 Q6Q795 121 aa13.32□□□□□ -0.28
NUP54-205ENST00000507257 DCHS1Q96JQ0 3298 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 KLLNB2CW77 178 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 J3KRW8 73 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 SPRY2O43597 315 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 ARL3P36405 182 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 GAGE5Q13069 117 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 GAGE6Q13070 117 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 MUC4Q99102 2169 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.31□□□□□ -0.28
NUP54-205ENST00000507257 TRAV41A0A0B4J266 112 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 A4D1N5 150 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 FAM90A27PA6NNH2 459 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms