RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 MRPL35Q9NZE8 188 aaKnown RBP7.36□□□□□ -1.23
HDAC3-205ENST00000469550 H3BMG7 143 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 CCDC144NLQ6NUI1 221 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 ATP6V0E2Q8NHE4 81 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 Q8TAT8 98 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 HIF1ANQ9NWT6 349 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 C21orf62Q9NYP8 219 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 SMAD5-AS1Q9Y6J3 95 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 NCBP2LA6PVI3 153 aaKnown RBP7.35□□□□□ -1.23
HDAC3-205ENST00000469550 HILS1P60008 231 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 ETDBQ3ZM63 59 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 LCNL1Q6ZST4 164 aa7.35□□□□□ -1.23
HDAC3-205ENST00000469550 ZNF418Q8TF45 676 aaPredicted RBP7.35□□□□□ -1.23
HDAC3-205ENST00000469550 IGHV4-4A0A075B6R2 117 aa7.34□□□□□ -1.23
HDAC3-205ENST00000469550 TMEM89A2RUT3 159 aa7.34□□□□□ -1.23
HDAC3-205ENST00000469550 TIMM23O14925 209 aa7.34□□□□□ -1.23
HDAC3-205ENST00000469550 PRB4P10163 310 aaPredicted RBP7.34□□□□□ -1.23
HDAC3-205ENST00000469550 NRACQ8N912 160 aa7.34□□□□□ -1.23
HDAC3-205ENST00000469550 HIST1H4GQ99525 98 aa7.34□□□□□ -1.23
HDAC3-205ENST00000469550 H7C1H1 209 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 J3QLI3 93 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 COX7A1P24310 79 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 RAB9AP51151 201 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 SH2D6Q7Z4S9 175 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 MTURNQ8N3F0 131 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 CFHR4Q92496 578 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 MYMXA0A1B0GTQ4 84 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 F8VRH5 84 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 GATA1P15976 413 aaPredicted RBP7.33□□□□□ -1.24
HDAC3-205ENST00000469550 C5orf64Q2M2E5 130 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 OR11H6Q8NGC7 330 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 MRAP2Q96G30 205 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 DPM3Q9P2X0 92 aa7.33□□□□□ -1.24
HDAC3-205ENST00000469550 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.32□□□□□ -1.24
HDAC3-205ENST00000469550 K7EMI3 77 aa7.32□□□□□ -1.24
HDAC3-205ENST00000469550 FSHBP01225 129 aa7.32□□□□□ -1.24
HDAC3-205ENST00000469550 CTSGP08311 255 aa7.32□□□□□ -1.24
HDAC3-205ENST00000469550 GATA3P23771 443 aa7.32□□□□□ -1.24
HDAC3-205ENST00000469550 DLX1P56177 255 aa7.32□□□□□ -1.24
HDAC3-205ENST00000469550 CKS1BP61024 79 aa7.32□□□□□ -1.24
HDAC3-205ENST00000469550 DYNAPQ8N1N2 210 aa7.32□□□□□ -1.24
HDAC3-205ENST00000469550 LY6G5BQ8NDX9 201 aa7.32□□□□□ -1.24
HDAC3-205ENST00000469550 IGKV3D-20A0A0C4DH25 116 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 OR11H12B2RN74 326 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 HOXA3O43365 443 aaPredicted RBP7.31□□□□□ -1.24
HDAC3-205ENST00000469550 MORN3Q6PF18 240 aaPredicted RBP7.31□□□□□ -1.24
HDAC3-205ENST00000469550 OR11H1Q8NG94 326 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 OR11H2Q8NH07 326 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 SLC50A1Q9BRV3 221 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 AVPP01185 164 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 FOXI1Q12951 378 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 AMTNQ6UX39 209 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 MRPL53Q96EL3 112 aaKnown RBP7.31□□□□□ -1.24
HDAC3-205ENST00000469550 C1QTNF4Q9BXJ3 329 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 MRPL16Q9NX20 251 aaKnown RBP7.31□□□□□ -1.24
HDAC3-205ENST00000469550 S4R3C0 116 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 SVEP1Q4LDE5 3571 aa7.31□□□□□ -1.24
HDAC3-205ENST00000469550 IGHV7-4-1A0A0J9YVY3 117 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 TMEM238LA0A1B0GVL6 79 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 A6NJY4 79 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 APOMO95445 188 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 HLA-DMBP28068 263 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 PRB3Q04118 309 aaPredicted RBP7.3□□□□□ -1.24
HDAC3-205ENST00000469550 KLRD1Q13241 179 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 KLK9Q2XQG4 91 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 ORMDL2Q53FV1 153 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 CFAP126Q5VTH2 177 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 DLX4Q92988 240 aaPredicted RBP7.3□□□□□ -1.24
HDAC3-205ENST00000469550 TIMD4Q96H15 378 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 VCX2Q9H322 139 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 KLK9Q9UKQ9 250 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 CYSLTR1Q9Y271 337 aa7.3□□□□□ -1.24
HDAC3-205ENST00000469550 WIPF1O43516 503 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 TRGV3P03979 118 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 ERCC8Q13216 396 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 IGFL4Q6B9Z1 124 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 NEXN-AS1Q8NBZ9 246 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 SMIM2Q9BVW6 85 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 TENM1Q9UKZ4 2725 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 PRAC2D3DTV9 90 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 BUB3O43684 328 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 LGALS1P09382 135 aaKnown RBP7.29□□□□□ -1.24
HDAC3-205ENST00000469550 PPIFP30405 207 aaKnown RBP7.29□□□□□ -1.24
HDAC3-205ENST00000469550 UBE2D1P51668 147 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 C3orf56Q8N813 242 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 TOMM6Q96B49 74 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 C20orf78Q9BR46 151 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 AGPAT4-IT1Q9H0P7 198 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 C11orf21Q9P2W6 132 aa7.29□□□□□ -1.24
HDAC3-205ENST00000469550 CENPVL3A0A0U1RRI6 287 aa7.28□□□□□ -1.24
HDAC3-205ENST00000469550 ODF3BA8MYP8 253 aa7.28□□□□□ -1.24
HDAC3-205ENST00000469550 INSL3P51460 131 aa7.28□□□□□ -1.24
HDAC3-205ENST00000469550 EBI3Q14213 229 aa7.28□□□□□ -1.24
HDAC3-205ENST00000469550 LYRM7Q5U5X0 104 aa7.28□□□□□ -1.24
HDAC3-205ENST00000469550 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.28□□□□□ -1.24
HDAC3-205ENST00000469550 C8orf86Q6ZUL3 223 aa7.28□□□□□ -1.24
HDAC3-205ENST00000469550 CDIP1Q9H305 208 aa7.28□□□□□ -1.24
HDAC3-205ENST00000469550 OOSP1A8MZH6 123 aa7.28□□□□□ -1.24
HDAC3-205ENST00000469550 SMCPP49901 116 aaPredicted RBP7.28□□□□□ -1.24
HDAC3-205ENST00000469550 ATP5G2Q06055 141 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms