RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 IGHV4-4A0A075B6R2 117 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 IGHV3OR16-12A0A075B7B8 117 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 TMSB15BA0A087X1C1 80 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 INSP01308 110 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 TYMSP04818 313 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 CXCL1P09341 107 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 HTN1P15515 57 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 RPS20P60866 119 aaKnown RBP4.27□□□□□ -1.73
USP39-213ENST00000467885 RHEBQ15382 184 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 WDR73Q6P4I2 378 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 LYZL1Q6UWQ5 148 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 C11orf72Q8NBR9 251 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 NUP35Q8NFH5 326 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 OR11H2Q8NH07 326 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 MRAPQ8TCY5 172 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 TSKUQ8WUA8 353 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 PTH2Q96A98 100 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 YPEL4Q96NS1 127 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 RCHY1Q96PM5 261 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 IMMP2LQ96T52 175 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 TM2D3Q9BRN9 247 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 GFRA4Q9GZZ7 299 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 IL36BQ9NZH7 164 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 TP53TG1Q9Y2A0 90 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 GOLT1BQ9Y3E0 138 aa4.27□□□□□ -1.73
USP39-213ENST00000467885 DNAH3Q8TD57 4116 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 MEGF8Q7Z7M0 2845 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 CXorf65A6NEN9 183 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 CBY3A6NI87 242 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 F2Z2F3 143 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 SNAI2O43623 268 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 OR5AL1P0C617 328 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 NTF3P20783 257 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 DAZ2Q13117 558 aaKnown RBP4.26□□□□□ -1.73
USP39-213ENST00000467885 DEFB135Q30KP9 77 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 ZNF493Q6ZR52 646 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 RNASE8Q8TDE3 154 aaKnown RBP4.26□□□□□ -1.73
USP39-213ENST00000467885 PGLYRP4Q96LB8 373 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 C9orf85Q96MD7 179 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 B9D2Q9BPU9 175 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 TMEM208Q9BTX3 173 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 GSN-AS1Q9NRJ2 163 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 MSRB1Q9NZV6 116 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 NAGKQ9UJ70 344 aa4.26□□□□□ -1.73
USP39-213ENST00000467885 IGHV4-28A0A0C4DH34 117 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 MUC21A0A0G2JKD1 596 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 MUC21A0A140T8X8 626 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 A0A1W2PPQ1 181 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 XKRY2A2RUG3 117 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 COLCA2A8K830 154 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 HIGD1CA8MV81 97 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 EIF4EBP3O60516 100 aaPredicted RBP4.25□□□□□ -1.73
USP39-213ENST00000467885 SPINK4O60575 86 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 SCO1O75880 301 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 MED14OSP0DP75 135 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 ASIPP42127 132 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 TCL1AP56279 114 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 LINC00315P59091 139 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 ELOBQ15370 118 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 RRN3P1Q2M238 152 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 POM121L12Q8N7R1 296 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 Q8NAQ8 132 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 IL17DQ8TAD2 202 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 RASL10AQ92737 203 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 SPXQ9BT56 116 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 CNFNQ9BYD5 112 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 ZMAT4Q9H898 229 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 RETNQ9HD89 108 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 KIF25-AS1Q9Y6Z4 181 aa4.25□□□□□ -1.73
USP39-213ENST00000467885 TRGV11A0A075B6L2 103 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 M0R2P5 195 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 DEFB4AO15263 64 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 CRYGDP07320 174 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 NHLRC4P0CG21 123 aaPredicted RBP4.24□□□□□ -1.73
USP39-213ENST00000467885 MIFP14174 115 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 SSTP61278 116 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 LGALS9BQ3B8N2 356 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 TMEM88Q6PEY1 159 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 LINC00612Q8N6U2 182 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 FER1L6-AS1Q8NA97 138 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 OR10AG1Q8NH19 301 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 TMEM263Q8WUH6 116 aaKnown RBP4.24□□□□□ -1.73
USP39-213ENST00000467885 KRTAP17-1Q9BYP8 105 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 JPT2Q9H910 190 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 NOP10Q9NPE3 64 aaKnown RBP4.24□□□□□ -1.73
USP39-213ENST00000467885 SMCO4Q9NRQ5 59 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 NAT8BQ9UHF3 227 aa4.24□□□□□ -1.73
USP39-213ENST00000467885 TIMM8BQ9Y5J9 83 aaPredicted RBP4.24□□□□□ -1.73
USP39-213ENST00000467885 TRBV24-1A0A075B6N3 115 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 TGIF2-C20orf24A0A0A6YYL0 155 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 A0A1B0GUT8 65 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 A0A1B0GXF2 115 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 H3BVH4 76 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 NXPH4O95158 308 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 S100A4P26447 101 aaKnown RBP4.23□□□□□ -1.73
USP39-213ENST00000467885 CTRLP40313 264 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 ZNF876PQ49A33 203 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 PIK3CD-AS1Q5SR53 167 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 Q6ZTI0 123 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 CBLN2Q8IUK8 224 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms