RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	LYPD6B	Q8NI32	183 aa		7.43	□□□□□ -1.22
PTPN7-204	ENST00000462815	SUN5	Q8TC36	379 aa		7.43	□□□□□ -1.22
PTPN7-204	ENST00000462815	LENEP	Q9Y5L5	61 aa		7.43	□□□□□ -1.22
PTPN7-204	ENST00000462815	TRGV11	A0A075B6L2	103 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	TRAV1-1	A0A0B4J248	108 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	IGHV3-38	A0A0C4DH36	116 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815		C9JCJ5	164 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	DIRC3	C9JPN6	131 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	H2AFB1	P0C5Y9	115 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	BLOC1S1	P78537	153 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	CCL20	P78556	96 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	PCNP	Q8WW12	178 aa	Known RBP	7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	TVP23C	Q96ET8	276 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	TXNDC17	Q9BRA2	123 aa		7.42	□□□□□ -1.22
PTPN7-204	ENST00000462815	MAP1LC3B2	A6NCE7	125 aa		7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	KRTAP29-1	A8MX34	341 aa	Predicted RBP	7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	GNRH2	O43555	120 aa		7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	TYMS	P04818	313 aa		7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	ARL14EPL	P0DKL9	152 aa		7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	FGF8	P55075	233 aa	Predicted RBP	7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	TAS2R45	P59539	299 aa		7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	KRTAP10-4	P60372	401 aa	Predicted RBP	7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	RAN	P62826	216 aa	Known RBP	7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	KHDC3L	Q587J8	217 aa		7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	PQLC2	Q6ZP29	291 aa		7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	SFT2D1	Q8WV19	159 aa		7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815	MAP1LC3B	Q9GZQ8	125 aa		7.41	□□□□□ -1.22
PTPN7-204	ENST00000462815		M0R2P5	195 aa		7.4	□□□□□ -1.22
PTPN7-204	ENST00000462815	CXorf1	O96002	111 aa		7.4	□□□□□ -1.22
PTPN7-204	ENST00000462815	GCHFR	P30047	84 aa		7.4	□□□□□ -1.22
PTPN7-204	ENST00000462815	CLLU1	Q5K131	121 aa		7.4	□□□□□ -1.22
PTPN7-204	ENST00000462815	FAM159A	Q6UWV7	190 aa		7.4	□□□□□ -1.22
PTPN7-204	ENST00000462815	OR4C5	Q8NGB2	326 aa		7.4	□□□□□ -1.22
PTPN7-204	ENST00000462815	PSCA	O43653	123 aa		7.39	□□□□□ -1.23
PTPN7-204	ENST00000462815	OR7C2	O60412	319 aa		7.39	□□□□□ -1.23
PTPN7-204	ENST00000462815	UBE2L3	P68036	154 aa	Known RBP	7.39	□□□□□ -1.23
PTPN7-204	ENST00000462815	SH2D6	Q7Z4S9	175 aa		7.39	□□□□□ -1.23
PTPN7-204	ENST00000462815		Q8N3U1	123 aa		7.39	□□□□□ -1.23
PTPN7-204	ENST00000462815	SLC25A29	Q8N8R3	303 aa		7.39	□□□□□ -1.23
PTPN7-204	ENST00000462815		A0A1B0GV50	99 aa		7.38	□□□□□ -1.23
PTPN7-204	ENST00000462815	LINC00694	P0DN24	101 aa		7.38	□□□□□ -1.23
PTPN7-204	ENST00000462815	CSN1S1	P47710	185 aa		7.38	□□□□□ -1.23
PTPN7-204	ENST00000462815	CFAP126	Q5VTH2	177 aa		7.38	□□□□□ -1.23
PTPN7-204	ENST00000462815		Q9HAA7	133 aa		7.38	□□□□□ -1.23
PTPN7-204	ENST00000462815	C11orf21	Q9P2W6	132 aa		7.38	□□□□□ -1.23
PTPN7-204	ENST00000462815	NAGK	Q9UJ70	344 aa		7.38	□□□□□ -1.23
PTPN7-204	ENST00000462815	TRAV8-1	A0A0A6YYK1	113 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	TRBV6-4	A0A1B0GX49	114 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815		F6UZH7	168 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	RS1	O15537	224 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	PPT1	P50897	306 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	RAB14	P61106	215 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	LAGE3	Q14657	143 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	LELP1	Q5T871	98 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	LINC00528	Q8N1L1	170 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	NHLRC2	Q8NBF2	726 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	OTOR	Q9NRC9	128 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	TMEM167B	Q9NRX6	74 aa		7.37	□□□□□ -1.23
PTPN7-204	ENST00000462815	TRAV21	A0A0B4J279	112 aa		7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	FBLL1	A6NHQ2	334 aa	Known RBP	7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	FAM74A7	A6NL05	159 aa		7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	TEX46	H3BTG2	121 aa		7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	IGHV3-30	P01768	117 aa		7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	IGHV3-33	P01772	117 aa		7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	PFN1	P07737	140 aa	Known RBP	7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	IGHV3-30-3	P0DP02	117 aa		7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	IGHV3-30-5	P0DP03	117 aa		7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	ZNF80	P51504	273 aa	Predicted RBP	7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	ARL6IP6	Q8N6S5	226 aa		7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815	C9orf85	Q96MD7	179 aa		7.36	□□□□□ -1.23
PTPN7-204	ENST00000462815		A0A1W2PRE2	83 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	LINC00862	A6NCI5	91 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	PGP	A6NDG6	321 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	PAGE4	O60829	102 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	GNG5	P63218	68 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	RHOH	Q15669	191 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	OR10J3	Q5JRS4	329 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	GOLT1A	Q6ZVE7	132 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	PTH2	Q96A98	100 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	SDF2L1	Q9HCN8	221 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	MED9	Q9NWA0	146 aa		7.35	□□□□□ -1.23
PTPN7-204	ENST00000462815	TRAV8-6	A0A0B4J262	113 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	RBFOX3	A6NFN3	312 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	PLA2G1B	P04054	148 aa	Known RBP	7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	RNASE3	P12724	160 aa	Known RBP	7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	UBE2G2	P60604	165 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	ZNF876P	Q49A33	203 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	SCX	Q7RTU7	201 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	FAM210A	Q96ND0	272 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	GTSF1L	Q9H1H1	148 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	TREM1	Q9NP99	234 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	MANBAL	Q9NQG1	85 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	GNG13	Q9P2W3	67 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815		Q9UF83	564 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	ARL2-SNX15	V9GYD0	113 aa		7.34	□□□□□ -1.23
PTPN7-204	ENST00000462815	IGHV3-73	A0A0B4J1V6	119 aa		7.33	□□□□□ -1.24
PTPN7-204	ENST00000462815	PGPEP1L	A6NFU8	196 aa		7.33	□□□□□ -1.24
PTPN7-204	ENST00000462815	GGTLC3	B5MD39	225 aa		7.33	□□□□□ -1.24
PTPN7-204	ENST00000462815	CIDEA	O60543	219 aa		7.33	□□□□□ -1.24
PTPN7-204	ENST00000462815	IGLV2-11	P01706	119 aa		7.33	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms