RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 IGFL2Q6UWQ7 119 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 TPPP3Q9BW30 176 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 IGKV3D-20A0A0C4DH25 116 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 SMKR1H3BMG3 65 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 LEPP41159 167 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 RNF7Q9UBF6 113 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 RAXQ9Y2V3 346 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 TENM4Q6N022 2769 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 LGALS1P09382 135 aaKnown RBP3.94□□□□□ -1.78
RIF1-203ENST00000428287 SCGB1C2P0DMR2 95 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 HCP5Q6MZN7 132 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 FOXC2Q99958 501 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 PRADC1Q9BSG0 188 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 M0R2P5 195 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 SH2D1AO60880 128 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 HIF1ANQ9NWT6 349 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 IGIPA6NJ69 53 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 WIPF1O43516 503 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 TRAV4A0A0B4J268 109 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 IGHV7-4-1A0A0J9YVY3 117 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 MBD3L4A6NDZ8 208 aaPredicted RBP3.94□□□□□ -1.78
RIF1-203ENST00000428287 MBD3L3A6NE82 208 aaPredicted RBP3.94□□□□□ -1.78
RIF1-203ENST00000428287 MBD3L5A6NJ08 208 aaPredicted RBP3.94□□□□□ -1.78
RIF1-203ENST00000428287 DUX4L9Q6RFH8 374 aaPredicted RBP3.94□□□□□ -1.78
RIF1-203ENST00000428287 POM121L12Q8N7R1 296 aa3.94□□□□□ -1.78
RIF1-203ENST00000428287 MBD3L2Q8NHZ7 208 aaPredicted RBP3.94□□□□□ -1.78
RIF1-203ENST00000428287 CRLF1O75462 422 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 IGHV3-30P01768 117 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 IGHV3-30-5P0DP03 117 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 PRTN3P24158 256 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 SMIM20Q8N5G0 67 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 ANKRD29Q8N6D5 301 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 IGLV11-55A0A075B6I3 123 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 TMEM78Q5T7P6 136 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 TMEM200BQ69YZ2 307 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 RAB1BQ9H0U4 201 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 H3BT86 120 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 M0R381 172 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 BUB3O43684 328 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 Q6ZQT7 251 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 FAM216BQ8N7L0 139 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 GFRALQ6UXV0 394 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 SEM1Q6ZVN7 128 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 IGHV1-46P01743 117 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 IFITM1P13164 125 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 ZNF876PQ49A33 203 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 GLMPQ8WWB7 406 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 SLC25A20O43772 301 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 CCL3L1P16619 93 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 POLR2KP53803 58 aaKnown RBP3.93□□□□□ -1.78
RIF1-203ENST00000428287 TDHQ8IZJ6 230 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 TOMM6Q96B49 74 aa3.93□□□□□ -1.78
RIF1-203ENST00000428287 EFNA4P52798 201 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 NBPF19A0A087WUL8 3843 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 ERCC8Q13216 396 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 Q8N1Y9 231 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 SPANXCQ9NY87 97 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 H3BTX0 84 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 TIMM23O14925 209 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 FXYD7P58549 80 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 WFDC3Q8IUB2 231 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 NRGNQ92686 78 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 A0A0B4J2C4 111 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 LOC107984156A0A0G2JMH3 177 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 LY6LH3BQJ8 138 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 NDUFA3O95167 84 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 ARL17AQ8IVW1 177 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 CTSZQ9UBR2 303 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 A0A0J9YX75 114 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 LOXP28300 417 aaPredicted RBP3.92□□□□□ -1.78
RIF1-203ENST00000428287 TRBV30A0A0K0K1B3 111 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 LGALS9O00182 355 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 C9orf106Q8NAJ2 232 aa3.92□□□□□ -1.78
RIF1-203ENST00000428287 MRPL53Q96EL3 112 aaKnown RBP3.92□□□□□ -1.78
RIF1-203ENST00000428287 A0A1W2PNU3 283 aaPredicted RBP3.91□□□□□ -1.78
RIF1-203ENST00000428287 ATP5G1P05496 136 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 GATA1P15976 413 aaPredicted RBP3.91□□□□□ -1.78
RIF1-203ENST00000428287 BAALCQ8WXS3 180 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 C8orf49Q96NF6 230 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 AKAP9Q99996 3911 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 TRBV27A0A0K0K1C4 114 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 IGHV1-8P0DP01 117 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 TIMM17AQ99595 171 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 CCL13Q99616 98 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 IGHV1-3A0A0C4DH29 117 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 C17orf100A8MU93 164 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 RNF223E7ERA6 249 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 TMEM178BH3BS89 294 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 VKORC1Q9BQB6 163 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 C9orf47Q6ZRZ4 202 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 SLC50A1Q9BRV3 221 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 SDHAF1A6NFY7 115 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 DNAJC30Q96LL9 226 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 C11orf21Q9P2W6 132 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 SS18L2Q9UHA2 77 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 TIMM8BQ9Y5J9 83 aaPredicted RBP3.91□□□□□ -1.78
RIF1-203ENST00000428287 KIF25-AS1Q9Y6Z4 181 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 C11orf86A6NJI1 115 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 NBR2O15453 112 aa3.91□□□□□ -1.78
RIF1-203ENST00000428287 EIF4EBP3O60516 100 aaPredicted RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms