RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 RPL39P62891 51 aaKnown RBP15.81■□□□□ 0.12
CMTM4-201ENST00000330687 NBR2O15453 112 aa15.8■□□□□ 0.12
CMTM4-201ENST00000330687 LGALS3P17931 250 aaKnown RBP15.8■□□□□ 0.12
CMTM4-201ENST00000330687 NEXN-AS1Q8NBZ9 246 aa15.8■□□□□ 0.12
CMTM4-201ENST00000330687 VCX2Q9H322 139 aa15.8■□□□□ 0.12
CMTM4-201ENST00000330687 ZNF56Q15929 161 aa15.8■□□□□ 0.12
CMTM4-201ENST00000330687 A0A0J9YY99 117 aa15.79■□□□□ 0.12
CMTM4-201ENST00000330687 CHCHD5Q9BSY4 110 aa15.79■□□□□ 0.12
CMTM4-201ENST00000330687 TP53TG1Q9Y2A0 90 aa15.79■□□□□ 0.12
CMTM4-201ENST00000330687 LY6HO94772 140 aa15.78■□□□□ 0.12
CMTM4-201ENST00000330687 RELNP78509 3460 aa15.78■□□□□ 0.12
CMTM4-201ENST00000330687 FANCD2OSQ96PS1 177 aa15.78■□□□□ 0.12
CMTM4-201ENST00000330687 TIMD4Q96H15 378 aa15.78■□□□□ 0.12
CMTM4-201ENST00000330687 TECTAO75443 2155 aa15.77■□□□□ 0.12
CMTM4-201ENST00000330687 TSPEAR-AS2P59090 65 aa15.77■□□□□ 0.11
CMTM4-201ENST00000330687 ELANEP08246 267 aa15.76■□□□□ 0.11
CMTM4-201ENST00000330687 CITED1Q99966 193 aa15.76■□□□□ 0.11
CMTM4-201ENST00000330687 ZNF256Q9Y2P7 627 aaPredicted RBP15.76■□□□□ 0.11
CMTM4-201ENST00000330687 FAM74A4Q5TZK3 123 aa15.76■□□□□ 0.11
CMTM4-201ENST00000330687 TRAV12-1A0A0B4J245 112 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 IGLV1-47P01700 117 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 OPRPNQ99935 248 aaPredicted RBP15.75■□□□□ 0.11
CMTM4-201ENST00000330687 TOMM6Q96B49 74 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 DUX3Q96PT4 197 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 CNFNQ9BYD5 112 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 FAM215AQ9Y5M1 114 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 IGHV7-4-1A0A0J9YVY3 117 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 CTSGP08311 255 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 CLEC19AQ6UXS0 136 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 C16orf92Q96LL3 132 aa15.75■□□□□ 0.11
CMTM4-201ENST00000330687 ID1P41134 155 aa15.74■□□□□ 0.11
CMTM4-201ENST00000330687 CEP295Q9C0D2 2601 aa15.74■□□□□ 0.11
CMTM4-201ENST00000330687 ASCL5Q7RTU5 278 aa15.74■□□□□ 0.11
CMTM4-201ENST00000330687 ANKHD1Q8IWZ3 2542 aaKnown RBP15.74■□□□□ 0.11
CMTM4-201ENST00000330687 FOXC1Q12948 553 aa15.73■□□□□ 0.11
CMTM4-201ENST00000330687 C2orf82Q6UX34 121 aa15.73■□□□□ 0.11
CMTM4-201ENST00000330687 FAM57AQ8TBR7 257 aa15.73■□□□□ 0.11
CMTM4-201ENST00000330687 C2CD3Q4AC94 2353 aa15.73■□□□□ 0.11
CMTM4-201ENST00000330687 A0A087WWL8 130 aa15.72■□□□□ 0.11
CMTM4-201ENST00000330687 C15orf32Q32M92 178 aa15.72■□□□□ 0.11
CMTM4-201ENST00000330687 TNFRSF13BO14836 293 aaPredicted RBP15.72■□□□□ 0.11
CMTM4-201ENST00000330687 IGHV3-30P01768 117 aa15.72■□□□□ 0.11
CMTM4-201ENST00000330687 IGHV3-30-5P0DP03 117 aa15.72■□□□□ 0.11
CMTM4-201ENST00000330687 SRD5A1P18405 259 aa15.72■□□□□ 0.11
CMTM4-201ENST00000330687 RNASE6Q93091 150 aaKnown RBP15.72■□□□□ 0.11
CMTM4-201ENST00000330687 THBDP07204 575 aa15.72■□□□□ 0.11
CMTM4-201ENST00000330687 FAM110AQ9BQ89 295 aa15.72■□□□□ 0.11
CMTM4-201ENST00000330687 F8W735 103 aaPredicted RBP15.71■□□□□ 0.11
CMTM4-201ENST00000330687 SLC50A1Q9BRV3 221 aa15.71■□□□□ 0.11
CMTM4-201ENST00000330687 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.71■□□□□ 0.114e-7■■■■□ 26.6
CMTM4-201ENST00000330687 MBD3L4A6NDZ8 208 aaPredicted RBP15.71■□□□□ 0.11
CMTM4-201ENST00000330687 MBD3L3A6NE82 208 aaPredicted RBP15.71■□□□□ 0.11
CMTM4-201ENST00000330687 LINC01546A6NGU7 62 aa15.71■□□□□ 0.11
CMTM4-201ENST00000330687 MBD3L5A6NJ08 208 aaPredicted RBP15.71■□□□□ 0.11
CMTM4-201ENST00000330687 J3QQQ9 107 aa15.71■□□□□ 0.11
CMTM4-201ENST00000330687 Q6ZS92 163 aa15.71■□□□□ 0.11
CMTM4-201ENST00000330687 MUSTN1Q8IVN3 82 aa15.71■□□□□ 0.11
CMTM4-201ENST00000330687 MBD3L2Q8NHZ7 208 aaPredicted RBP15.71■□□□□ 0.11
CMTM4-201ENST00000330687 MAP1AP78559 2803 aaPredicted RBP15.71■□□□□ 0.11
CMTM4-201ENST00000330687 RNASE4P34096 147 aaKnown RBP15.71■□□□□ 0.1
CMTM4-201ENST00000330687 MRPL23Q16540 153 aaKnown RBP15.71■□□□□ 0.1
CMTM4-201ENST00000330687 PRR9Q5T870 116 aa15.71■□□□□ 0.1
CMTM4-201ENST00000330687 PPDPFQ9H3Y8 114 aa15.71■□□□□ 0.1
CMTM4-201ENST00000330687 JPT2Q9H910 190 aa15.71■□□□□ 0.1
CMTM4-201ENST00000330687 GNRH2O43555 120 aa15.7■□□□□ 0.1
CMTM4-201ENST00000330687 LINC01620Q4KN68 170 aa15.7■□□□□ 0.1
CMTM4-201ENST00000330687 IGLV11-55A0A075B6I3 123 aa15.7■□□□□ 0.1
CMTM4-201ENST00000330687 MSRB2Q9Y3D2 182 aa15.7■□□□□ 0.1
CMTM4-201ENST00000330687 H3BMM0 161 aa15.69■□□□□ 0.1
CMTM4-201ENST00000330687 UBE2WQ96B02 151 aa15.69■□□□□ 0.1
CMTM4-201ENST00000330687 LINC00527Q9UJ94 153 aa15.69■□□□□ 0.1
CMTM4-201ENST00000330687 COX6B1P14854 86 aa15.69■□□□□ 0.1
CMTM4-201ENST00000330687 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.69■□□□□ 0.1
CMTM4-201ENST00000330687 DPM3Q9P2X0 92 aa15.69■□□□□ 0.1
CMTM4-201ENST00000330687 TRAV12-3A0A0B4J271 114 aa15.68■□□□□ 0.1
CMTM4-201ENST00000330687 BRI3O95415 125 aa15.68■□□□□ 0.1
CMTM4-201ENST00000330687 ASIPP42127 132 aa15.68■□□□□ 0.1
CMTM4-201ENST00000330687 DPH3P1Q9H4G8 78 aa15.68■□□□□ 0.1
CMTM4-201ENST00000330687 ANKRD11Q6UB99 2663 aaPredicted RBP15.67■□□□□ 0.1
CMTM4-201ENST00000330687 F6UB75 175 aa15.67■□□□□ 0.1
CMTM4-201ENST00000330687 ATXN8Q156A1 80 aa15.67■□□□□ 0.1
CMTM4-201ENST00000330687 TMEM95Q3KNT9 176 aa15.67■□□□□ 0.1
CMTM4-201ENST00000330687 Q6ZSV7 163 aa15.67■□□□□ 0.1
CMTM4-201ENST00000330687 ZNF580Q9UK33 172 aa15.67■□□□□ 0.1
CMTM4-201ENST00000330687 IGHV3-33P01772 117 aa15.66■□□□□ 0.1
CMTM4-201ENST00000330687 CRYGDP07320 174 aa15.66■□□□□ 0.1
CMTM4-201ENST00000330687 C8orf31Q8N9H6 132 aa15.66■□□□□ 0.1
CMTM4-201ENST00000330687 CLEC2BQ92478 149 aa15.66■□□□□ 0.1
CMTM4-201ENST00000330687 NACAE9PAV3 2078 aa15.66■□□□□ 0.1
CMTM4-201ENST00000330687 PMVKQ15126 192 aa15.66■□□□□ 0.1
CMTM4-201ENST00000330687 SLC25A29Q8N8R3 303 aa15.66■□□□□ 0.1
CMTM4-201ENST00000330687 ODF3Q96PU9 254 aa15.66■□□□□ 0.1
CMTM4-201ENST00000330687 LINC01619G3V211 115 aa15.65■□□□□ 0.1
CMTM4-201ENST00000330687 OR10J6PQ8NGY7 276 aa15.65■□□□□ 0.1
CMTM4-201ENST00000330687 BUB3O43684 328 aa15.65■□□□□ 0.1
CMTM4-201ENST00000330687 TRAV8-3A0A0A6YYJ7 113 aa15.64■□□□□ 0.09
CMTM4-201ENST00000330687 RBAKDNA6NC62 111 aa15.64■□□□□ 0.09
CMTM4-201ENST00000330687 DEFB123Q8N688 67 aa15.64■□□□□ 0.09
CMTM4-201ENST00000330687 ZNRF2Q8NHG8 242 aa15.64■□□□□ 0.09
CMTM4-201ENST00000330687 SPXQ9BT56 116 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms