RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CFHR4Q92496 578 aa12□□□□□ -0.49
SHH-201ENST00000297261 SPAG8Q99932 426 aaPredicted RBP12□□□□□ -0.49
SHH-201ENST00000297261 ATP6V0E1O15342 81 aa12□□□□□ -0.49
SHH-201ENST00000297261 FOXE3Q13461 319 aa12□□□□□ -0.49
SHH-201ENST00000297261 GAGE2AQ6NT46 116 aa12□□□□□ -0.49
SHH-201ENST00000297261 MBD6Q96DN6 1003 aa12□□□□□ -0.49
SHH-201ENST00000297261 SONP18583 2426 aaKnown RBP12□□□□□ -0.49
SHH-201ENST00000297261 BRD3OSQ6XYD6 125 aa12□□□□□ -0.49
SHH-201ENST00000297261 KNCNA6PVL3 124 aa11.99□□□□□ -0.49
SHH-201ENST00000297261 FBXL19-AS1Q494R0 122 aa11.99□□□□□ -0.49
SHH-201ENST00000297261 PHLDA1Q8WV24 401 aaPredicted RBP11.99□□□□□ -0.49
SHH-201ENST00000297261 TRBV7-1A0A0A6YYK4 115 aa11.99□□□□□ -0.49
SHH-201ENST00000297261 LINC00158P58513 81 aa11.99□□□□□ -0.49
SHH-201ENST00000297261 GATD1Q8NB37 220 aa11.99□□□□□ -0.49
SHH-201ENST00000297261 C1orf159Q96HA4 380 aa11.99□□□□□ -0.49
SHH-201ENST00000297261 CITED1Q99966 193 aa11.99□□□□□ -0.49
SHH-201ENST00000297261 OVOL3O00110 214 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 TRAV13-1A0A0B4J241 112 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 ODF1Q14990 250 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 MINOS1Q5TGZ0 78 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 HIGD1BQ9P298 99 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 MINOS1-NBL1R4GNA1 71 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 VPS13AQ96RL7 3174 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 OOSP1A8MZH6 123 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 DUSP14O95147 198 aaKnown RBP11.98□□□□□ -0.49
SHH-201ENST00000297261 FOXI1Q12951 378 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 PRIMA1Q86XR5 153 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 TRGV11A0A075B6L2 103 aa11.98□□□□□ -0.49
SHH-201ENST00000297261 TRGV2A0A075B6R0 118 aa11.97□□□□□ -0.49
SHH-201ENST00000297261 PRSS22Q9GZN4 317 aa11.97□□□□□ -0.49
SHH-201ENST00000297261 RBMY1BA6NDE4 496 aaKnown RBP11.97□□□□□ -0.49
SHH-201ENST00000297261 RBMY1EA6NEQ0 496 aaKnown RBP11.97□□□□□ -0.49
SHH-201ENST00000297261 RBMY1DP0C7P1 496 aaKnown RBP11.97□□□□□ -0.49
SHH-201ENST00000297261 RBMY1A1P0DJD3 496 aaKnown RBP11.97□□□□□ -0.49
SHH-201ENST00000297261 RBMY1CP0DJD4 496 aa11.97□□□□□ -0.49
SHH-201ENST00000297261 TEN1Q86WV5 123 aa11.97□□□□□ -0.49
SHH-201ENST00000297261 K7EIM0 57 aa11.96□□□□□ -0.49
SHH-201ENST00000297261 CFC1BP0CG36 223 aa11.96□□□□□ -0.49
SHH-201ENST00000297261 CFC1P0CG37 223 aa11.96□□□□□ -0.49
SHH-201ENST00000297261 SAA4P35542 130 aa11.96□□□□□ -0.49
SHH-201ENST00000297261 CR1LQ2VPA4 569 aa11.96□□□□□ -0.49
SHH-201ENST00000297261 RPL39LQ96EH5 51 aaKnown RBP11.96□□□□□ -0.49
SHH-201ENST00000297261 NDUFA12Q9UI09 145 aa11.96□□□□□ -0.5
SHH-201ENST00000297261 IGKV1D-37A0A075B6S9 117 aa11.95□□□□□ -0.5
SHH-201ENST00000297261 I3L2K1 104 aa11.95□□□□□ -0.5
SHH-201ENST00000297261 PAX4O43316 350 aa11.95□□□□□ -0.5
SHH-201ENST00000297261 TMEM141Q96I45 108 aa11.95□□□□□ -0.5
SHH-201ENST00000297261 CARD19Q96LW7 228 aa11.95□□□□□ -0.5
SHH-201ENST00000297261 CRPP02741 224 aa11.95□□□□□ -0.5
SHH-201ENST00000297261 PRB1P04280 392 aa11.95□□□□□ -0.5
SHH-201ENST00000297261 C1orf229Q6ZS94 237 aaPredicted RBP11.95□□□□□ -0.5
SHH-201ENST00000297261 SPEGQ15772 3267 aa11.95□□□□□ -0.5
SHH-201ENST00000297261 MLST8Q9BVC4 326 aa11.95□□□□□ -0.5
SHH-201ENST00000297261 COL6A3P12111 3177 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 F6UB75 175 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 CGB3P0DN86 165 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 CGB7P0DN87 165 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 PRORYQ9H606 182 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 RS1O15537 224 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 GNRH2O43555 120 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 RNASE13Q5GAN3 156 aaKnown RBP11.94□□□□□ -0.5
SHH-201ENST00000297261 Q8N976 141 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 H3BUX3 64 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 C3orf56Q8N813 242 aa11.94□□□□□ -0.5
SHH-201ENST00000297261 SPINK13Q1W4C9 94 aa11.93□□□□□ -0.5
SHH-201ENST00000297261 FAM110DQ8TAY7 271 aaPredicted RBP11.93□□□□□ -0.5
SHH-201ENST00000297261 LGALS1P09382 135 aaKnown RBP11.93□□□□□ -0.5
SHH-201ENST00000297261 KLK9Q9UKQ9 250 aa11.93□□□□□ -0.5
SHH-201ENST00000297261 A4D1N5 150 aa11.93□□□□□ -0.5
SHH-201ENST00000297261 C11orf68Q9H3H3 251 aaKnown RBP11.93□□□□□ -0.5
SHH-201ENST00000297261 ZNF493Q6ZR52 646 aa11.92□□□□□ -0.5
SHH-201ENST00000297261 TRPT1Q86TN4 253 aaKnown RBP11.92□□□□□ -0.5
SHH-201ENST00000297261 TRAV12-2A0A075B6T6 113 aa11.92□□□□□ -0.5
SHH-201ENST00000297261 PRAC2D3DTV9 90 aa11.92□□□□□ -0.5
SHH-201ENST00000297261 IGHV3-53P01767 116 aa11.92□□□□□ -0.5
SHH-201ENST00000297261 TNRC18O15417 2968 aaPredicted RBP11.92□□□□□ -0.5
SHH-201ENST00000297261 ANKRD29Q8N6D5 301 aa11.92□□□□□ -0.5
SHH-201ENST00000297261 EIF4EBP1Q13541 118 aaPredicted RBP11.91□□□□□ -0.5
SHH-201ENST00000297261 C8orf31Q8N9H6 132 aa11.91□□□□□ -0.5
SHH-201ENST00000297261 ARHGAP32A7KAX9 2087 aa11.91□□□□□ -0.5
SHH-201ENST00000297261 IGKV2D-26A0A0A0MRZ7 120 aa11.91□□□□□ -0.5
SHH-201ENST00000297261 RUSC1-AS1Q66K80 236 aa11.91□□□□□ -0.5
SHH-201ENST00000297261 Q8N7P7 452 aa11.91□□□□□ -0.5
SHH-201ENST00000297261 RASL10AQ92737 203 aa11.91□□□□□ -0.5
SHH-201ENST00000297261 CHCHD5Q9BSY4 110 aa11.91□□□□□ -0.5
SHH-201ENST00000297261 SPANXA1Q9NS26 97 aa11.91□□□□□ -0.5
SHH-201ENST00000297261 UBE2E1P51965 193 aa11.9□□□□□ -0.5
SHH-201ENST00000297261 SP5Q6BEB4 398 aaPredicted RBP11.9□□□□□ -0.5
SHH-201ENST00000297261 C2orf91Q6ZV80 131 aa11.9□□□□□ -0.5
SHH-201ENST00000297261 DAZ1Q9NQZ3 744 aaKnown RBP11.9□□□□□ -0.5
SHH-201ENST00000297261 B4DSR2 109 aa11.9□□□□□ -0.5
SHH-201ENST00000297261 RNF183Q96D59 192 aa11.89□□□□□ -0.51
SHH-201ENST00000297261 CDSNQ15517 529 aa11.89□□□□□ -0.51
SHH-201ENST00000297261 WDFY4Q6ZS81 3184 aa11.89□□□□□ -0.51
SHH-201ENST00000297261 IGLV2-23P01705 113 aa11.89□□□□□ -0.51
SHH-201ENST00000297261 MT-ATP8P03928 68 aa11.89□□□□□ -0.51
SHH-201ENST00000297261 SPANXB1Q9NS25 103 aaPredicted RBP11.88□□□□□ -0.51
SHH-201ENST00000297261 IGHV3-16A0A0C4DH30 117 aa11.88□□□□□ -0.51
SHH-201ENST00000297261 IGHV3-38A0A0C4DH36 116 aa11.88□□□□□ -0.51
SHH-201ENST00000297261 LEPROTO15243 131 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms