RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 RPL39LQ96EH5 51 aaKnown RBP13.44□□□□□ -0.26
SHANK1-201ENST00000293441 IGHV4-4A0A075B6R2 117 aa13.44□□□□□ -0.26
SHANK1-201ENST00000293441 GATA1P15976 413 aaPredicted RBP13.44□□□□□ -0.26
SHANK1-201ENST00000293441 LENEPQ9Y5L5 61 aa13.43□□□□□ -0.26
SHANK1-201ENST00000293441 C2orf70A6NJV1 201 aa13.43□□□□□ -0.26
SHANK1-201ENST00000293441 TRAV12-1A0A0B4J245 112 aa13.43□□□□□ -0.26
SHANK1-201ENST00000293441 MED13Q9UHV7 2174 aa13.43□□□□□ -0.26
SHANK1-201ENST00000293441 TRBV20-1A0A075B6N2 111 aa13.43□□□□□ -0.26
SHANK1-201ENST00000293441 DEFB4AO15263 64 aa13.43□□□□□ -0.26
SHANK1-201ENST00000293441 CTSGP08311 255 aa13.43□□□□□ -0.26
SHANK1-201ENST00000293441 COX8AP10176 69 aa13.42□□□□□ -0.26
SHANK1-201ENST00000293441 RNF138Q8WVD3 245 aa13.42□□□□□ -0.26
SHANK1-201ENST00000293441 UBL5Q9BZL1 73 aa13.42□□□□□ -0.26
SHANK1-201ENST00000293441 PRO1854Q9UHT4 67 aa13.42□□□□□ -0.26
SHANK1-201ENST00000293441 BOD1L2Q8IYS8 172 aa13.42□□□□□ -0.26
SHANK1-201ENST00000293441 Q9H8V8 135 aa13.42□□□□□ -0.26
SHANK1-201ENST00000293441 SLC25A29Q8N8R3 303 aa13.42□□□□□ -0.26
SHANK1-201ENST00000293441 CITED2Q99967 270 aaPredicted RBP13.41□□□□□ -0.26
SHANK1-201ENST00000293441 RNF152Q8N8N0 203 aa13.41□□□□□ -0.26
SHANK1-201ENST00000293441 WISP2O76076 250 aa13.41□□□□□ -0.26
SHANK1-201ENST00000293441 Q8N7P7 452 aa13.41□□□□□ -0.26
SHANK1-201ENST00000293441 TINCRA0A1B0GVN0 87 aa13.41□□□□□ -0.26
SHANK1-201ENST00000293441 hADV29S1A0JD25 119 aa13.41□□□□□ -0.26
SHANK1-201ENST00000293441 CAMK2N2Q96S95 79 aa13.41□□□□□ -0.26
SHANK1-201ENST00000293441 IGLL1P15814 213 aa13.41□□□□□ -0.26
SHANK1-201ENST00000293441 DENND4AQ7Z401 1863 aa13.4□□□□□ -0.26
SHANK1-201ENST00000293441 NDUFS5O43920 106 aa13.4□□□□□ -0.26
SHANK1-201ENST00000293441 DEFB135Q30KP9 77 aa13.4□□□□□ -0.26
SHANK1-201ENST00000293441 C4orf3Q8WVX3 66 aa13.4□□□□□ -0.26
SHANK1-201ENST00000293441 C9orf118A6NHY6 69 aa13.4□□□□□ -0.26
SHANK1-201ENST00000293441 MRPL52Q86TS9 123 aaKnown RBP13.4□□□□□ -0.26
SHANK1-201ENST00000293441 NOTCH3Q9UM47 2321 aa13.4□□□□□ -0.26
SHANK1-201ENST00000293441 Q8NA96 180 aa13.39□□□□□ -0.27
SHANK1-201ENST00000293441 K7ERJ3 54 aa13.39□□□□□ -0.27
SHANK1-201ENST00000293441 IGHG4P01861 327 aa13.39□□□□□ -0.27
SHANK1-201ENST00000293441 AMTNQ6UX39 209 aa13.39□□□□□ -0.27
SHANK1-201ENST00000293441 CACNA1HO95180 2353 aa13.39□□□□□ -0.27
SHANK1-201ENST00000293441 ZNF503Q96F45 646 aa13.39□□□□□ -0.27
SHANK1-201ENST00000293441 C20orf144Q9BQM9 153 aa13.39□□□□□ -0.27
SHANK1-201ENST00000293441 MYCNOSP40205 109 aa13.38□□□□□ -0.27
SHANK1-201ENST00000293441 IGKV1-17P01599 117 aa13.38□□□□□ -0.27
SHANK1-201ENST00000293441 TIRAPP58753 221 aa13.38□□□□□ -0.27
SHANK1-201ENST00000293441 CARD19Q96LW7 228 aa13.38□□□□□ -0.27
SHANK1-201ENST00000293441 TRAV4A0A0B4J268 109 aa13.38□□□□□ -0.27
SHANK1-201ENST00000293441 DAZ2Q13117 558 aaKnown RBP13.38□□□□□ -0.27
SHANK1-201ENST00000293441 DAZ4Q86SG3 579 aaKnown RBP13.38□□□□□ -0.27
SHANK1-201ENST00000293441 DAZ3Q9NR90 486 aaKnown RBP13.38□□□□□ -0.27
SHANK1-201ENST00000293441 CLPSL1A2RUU4 121 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 HHLA3Q9XRX5 114 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 SPRY4Q9C004 299 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 SPANXA1Q9NS26 97 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 TMEM131Q92545 1883 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 COX7A2LO14548 114 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 IGLC2P0DOY2 106 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 IGLC3P0DOY3 106 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 PRORYQ9H606 182 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 ETDCA0A1B0GVM5 59 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 Q8N1Y9 231 aa13.37□□□□□ -0.27
SHANK1-201ENST00000293441 DNAJC9-AS1A6NH13 148 aa13.36□□□□□ -0.27
SHANK1-201ENST00000293441 PKIGQ9Y2B9 76 aa13.36□□□□□ -0.27
SHANK1-201ENST00000293441 SH2D6Q7Z4S9 175 aa13.36□□□□□ -0.27
SHANK1-201ENST00000293441 TEX22C9J3V5 150 aa13.35□□□□□ -0.27
SHANK1-201ENST00000293441 ZNF124Q15973 351 aa13.35□□□□□ -0.27
SHANK1-201ENST00000293441 BVES-AS1Q5T3Y7 98 aa13.35□□□□□ -0.27
SHANK1-201ENST00000293441 PATE2Q6UY27 113 aa13.35□□□□□ -0.27
SHANK1-201ENST00000293441 SIRPDQ9H106 197 aa13.35□□□□□ -0.27
SHANK1-201ENST00000293441 SMAD5-AS1Q9Y6J3 95 aa13.35□□□□□ -0.27
SHANK1-201ENST00000293441 PRAC2D3DTV9 90 aa13.35□□□□□ -0.27
SHANK1-201ENST00000293441 NACAE9PAV3 2078 aa13.35□□□□□ -0.27
SHANK1-201ENST00000293441 WI2-2373I1.2A0A1W2PRP0 233 aa13.34□□□□□ -0.27
SHANK1-201ENST00000293441 DEFB1P60022 68 aa13.34□□□□□ -0.27
SHANK1-201ENST00000293441 MAJINQ3KP22 176 aa13.34□□□□□ -0.27
SHANK1-201ENST00000293441 C10orf91Q5T1B1 145 aa13.34□□□□□ -0.27
SHANK1-201ENST00000293441 UTF1Q5T230 341 aa13.34□□□□□ -0.27
SHANK1-201ENST00000293441 K7EMI3 77 aa13.34□□□□□ -0.27
SHANK1-201ENST00000293441 HERV-K104P63124 156 aa13.34□□□□□ -0.27
SHANK1-201ENST00000293441 IL15RAQ13261 267 aa13.34□□□□□ -0.27
SHANK1-201ENST00000293441 MSRB1Q9NZV6 116 aa13.34□□□□□ -0.27
SHANK1-201ENST00000293441 SHANK1Q9Y566 2161 aa13.33□□□□□ -0.27
SHANK1-201ENST00000293441 TRBV12-3P01733 135 aa13.33□□□□□ -0.28
SHANK1-201ENST00000293441 KLK5Q9Y337 293 aaPredicted RBP13.33□□□□□ -0.28
SHANK1-201ENST00000293441 IGHG2P01859 326 aa13.32□□□□□ -0.28
SHANK1-201ENST00000293441 C19orf84I3L1E1 186 aa13.32□□□□□ -0.28
SHANK1-201ENST00000293441 PLA2G5P39877 138 aa13.32□□□□□ -0.28
SHANK1-201ENST00000293441 GPHB5Q86YW7 130 aa13.32□□□□□ -0.28
SHANK1-201ENST00000293441 ODF3L1Q8IXM7 274 aa13.32□□□□□ -0.28
SHANK1-201ENST00000293441 K7EMT4 169 aa13.32□□□□□ -0.28
SHANK1-201ENST00000293441 PPDPFLQ8WWR9 84 aa13.32□□□□□ -0.28
SHANK1-201ENST00000293441 IGLL5B9A064 214 aa13.32□□□□□ -0.28
SHANK1-201ENST00000293441 ZNF106Q9H2Y7 1883 aaKnown RBP13.32□□□□□ -0.28
SHANK1-201ENST00000293441 CHD3Q12873 2000 aaKnown RBP13.31□□□□□ -0.28
SHANK1-201ENST00000293441 ZNF747Q9BV97 191 aa13.31□□□□□ -0.28
SHANK1-201ENST00000293441 E7EUB6 86 aa13.31□□□□□ -0.28
SHANK1-201ENST00000293441 IGLV1-47P01700 117 aa13.31□□□□□ -0.28
SHANK1-201ENST00000293441 HIST2H2BCQ6DN03 193 aa13.31□□□□□ -0.28
SHANK1-201ENST00000293441 Q6ZSR3 168 aa13.31□□□□□ -0.28
SHANK1-201ENST00000293441 MSMPQ1L6U9 139 aa13.31□□□□□ -0.28
SHANK1-201ENST00000293441 ZFP2Q6ZN57 461 aa13.31□□□□□ -0.28
SHANK1-201ENST00000293441 TIMM17AQ99595 171 aa13.31□□□□□ -0.28
SHANK1-201ENST00000293441 FBXL19-AS1Q494R0 122 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms