RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 PAX4O43316 350 aa12.91□□□□□ -0.34
PHRF1-201ENST00000264555 CFHR3Q02985 330 aa12.91□□□□□ -0.34
PHRF1-201ENST00000264555 CUL9Q8IWT3 2517 aa12.91□□□□□ -0.34
PHRF1-201ENST00000264555 SLC25A20O43772 301 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 TAL2Q16559 108 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 GAGE7O76087 117 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 GAGE12FP0CL80 117 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 GAGE12GP0CL81 117 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 GAGE12IP0CL82 117 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 CTRLP40313 264 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 RHOHQ15669 191 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 GPHB5Q86YW7 130 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 C11orf68Q9H3H3 251 aaKnown RBP12.9□□□□□ -0.34
PHRF1-201ENST00000264555 LY6LH3BQJ8 138 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 LEPROTO15243 131 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 PTPRQQ9UMZ3 2332 aa12.9□□□□□ -0.34
PHRF1-201ENST00000264555 A6NDX4 124 aa12.9□□□□□ -0.35
PHRF1-201ENST00000264555 CCL24O00175 119 aa12.9□□□□□ -0.35
PHRF1-201ENST00000264555 SLURP1P55000 103 aa12.9□□□□□ -0.35
PHRF1-201ENST00000264555 ANAPC13Q9BS18 74 aa12.9□□□□□ -0.35
PHRF1-201ENST00000264555 CHD3Q12873 2000 aaKnown RBP12.9□□□□□ -0.35
PHRF1-201ENST00000264555 IGHV3-38A0A0C4DH36 116 aa12.89□□□□□ -0.35
PHRF1-201ENST00000264555 LINC01545Q5VT33 79 aa12.89□□□□□ -0.35
PHRF1-201ENST00000264555 PRSS29PA6NIE9 313 aa12.89□□□□□ -0.35
PHRF1-201ENST00000264555 DPH3Q96FX2 82 aa12.89□□□□□ -0.35
PHRF1-201ENST00000264555 SPAG8Q99932 426 aaPredicted RBP12.89□□□□□ -0.35
PHRF1-201ENST00000264555 LINC00173Q6ZV60 143 aa12.89□□□□□ -0.35
PHRF1-201ENST00000264555 TRAV8-4A0A0B4J246 113 aa12.88□□□□□ -0.35
PHRF1-201ENST00000264555 SPRY2O43597 315 aa12.88□□□□□ -0.35
PHRF1-201ENST00000264555 TMEM243Q9BU79 118 aa12.88□□□□□ -0.35
PHRF1-201ENST00000264555 TDRG1Q3Y452 100 aa12.88□□□□□ -0.35
PHRF1-201ENST00000264555 CEND1Q8N111 149 aa12.87□□□□□ -0.35
PHRF1-201ENST00000264555 C19orf84I3L1E1 186 aa12.87□□□□□ -0.35
PHRF1-201ENST00000264555 S100A7L2Q5SY68 101 aa12.87□□□□□ -0.35
PHRF1-201ENST00000264555 RNF152Q8N8N0 203 aa12.87□□□□□ -0.35
PHRF1-201ENST00000264555 CCDC140Q96MF4 163 aa12.87□□□□□ -0.35
PHRF1-201ENST00000264555 ARHGAP21Q5T5U3 1957 aa12.86□□□□□ -0.35
PHRF1-201ENST00000264555 C11orf71Q6IPW1 123 aa12.86□□□□□ -0.35
PHRF1-201ENST00000264555 IGHV4OR15-8A0A075B7B6 117 aa12.86□□□□□ -0.35
PHRF1-201ENST00000264555 A0A087WW49 117 aa12.86□□□□□ -0.35
PHRF1-201ENST00000264555 EBI3Q14213 229 aa12.86□□□□□ -0.35
PHRF1-201ENST00000264555 J3QQQ9 107 aa12.86□□□□□ -0.35
PHRF1-201ENST00000264555 RPL39LQ96EH5 51 aaKnown RBP12.86□□□□□ -0.35
PHRF1-201ENST00000264555 MLST8Q9BVC4 326 aa12.86□□□□□ -0.35
PHRF1-201ENST00000264555 A0A1B0GXF2 115 aa12.86□□□□□ -0.35
PHRF1-201ENST00000264555 UNQ9165/PRO28630Q6UXU0 137 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 TNFRSF13BO14836 293 aaPredicted RBP12.85□□□□□ -0.35
PHRF1-201ENST00000264555 MED14OSP0DP75 135 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 SUMO4Q6EEV6 95 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 ADAMTSL5Q6ZMM2 481 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 NDUFA12Q9UI09 145 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 NPSP0C0P6 89 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 C2orf82Q6UX34 121 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 U3KQE9 123 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 WDR87Q6ZQQ6 2873 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 TNCP24821 2201 aa12.85□□□□□ -0.35
PHRF1-201ENST00000264555 C2orf70A6NJV1 201 aa12.84□□□□□ -0.35
PHRF1-201ENST00000264555 DAD1P61803 113 aa12.84□□□□□ -0.35
PHRF1-201ENST00000264555 YPEL4Q96NS1 127 aa12.84□□□□□ -0.35
PHRF1-201ENST00000264555 ZNF625Q96I27 306 aaPredicted RBP12.84□□□□□ -0.35
PHRF1-201ENST00000264555 LINC00322Q6ZN03 302 aaPredicted RBP12.84□□□□□ -0.35
PHRF1-201ENST00000264555 COL5A1P20908 1838 aaPredicted RBP12.84□□□□□ -0.35
PHRF1-201ENST00000264555 TRBV20-1A0A075B6N2 111 aa12.84□□□□□ -0.35
PHRF1-201ENST00000264555 TRBV12-3P01733 135 aa12.84□□□□□ -0.35
PHRF1-201ENST00000264555 APOC4P55056 127 aa12.84□□□□□ -0.35
PHRF1-201ENST00000264555 LINC01548A6NM66 108 aa12.83□□□□□ -0.36
PHRF1-201ENST00000264555 PCP2Q8IVA1 136 aa12.83□□□□□ -0.36
PHRF1-201ENST00000264555 APRG1Q8IVJ8 170 aa12.83□□□□□ -0.36
PHRF1-201ENST00000264555 C3orf56Q8N813 242 aa12.83□□□□□ -0.36
PHRF1-201ENST00000264555 JPT2Q9H910 190 aa12.83□□□□□ -0.36
PHRF1-201ENST00000264555 K7EP34 96 aa12.83□□□□□ -0.36
PHRF1-201ENST00000264555 OVOL2Q9BRP0 275 aa12.83□□□□□ -0.36
PHRF1-201ENST00000264555 CST9LQ9H4G1 147 aa12.82□□□□□ -0.36
PHRF1-201ENST00000264555 HERVK_113P63121 156 aa12.82□□□□□ -0.36
PHRF1-201ENST00000264555 BOD1L2Q8IYS8 172 aa12.82□□□□□ -0.36
PHRF1-201ENST00000264555 GATD1Q8NB37 220 aa12.82□□□□□ -0.36
PHRF1-201ENST00000264555 IGF1P05019 195 aa12.82□□□□□ -0.36
PHRF1-201ENST00000264555 A0A1W2PPM0 123 aa12.82□□□□□ -0.36
PHRF1-201ENST00000264555 VWC2LB2RUY7 222 aa12.81□□□□□ -0.36
PHRF1-201ENST00000264555 F5H768 121 aa12.81□□□□□ -0.36
PHRF1-201ENST00000264555 SCRT2Q9NQ03 307 aa12.81□□□□□ -0.36
PHRF1-201ENST00000264555 C9JAW5 83 aa12.81□□□□□ -0.36
PHRF1-201ENST00000264555 MBD6Q96DN6 1003 aa12.81□□□□□ -0.36
PHRF1-201ENST00000264555 GAGE6Q13070 117 aa12.81□□□□□ -0.36
PHRF1-201ENST00000264555 OCIAD2Q56VL3 154 aa12.81□□□□□ -0.36
PHRF1-201ENST00000264555 Q71RC1 249 aaPredicted RBP12.81□□□□□ -0.36
PHRF1-201ENST00000264555 NOP10Q9NPE3 64 aaKnown RBP12.81□□□□□ -0.36
PHRF1-201ENST00000264555 LOXL1Q08397 574 aaPredicted RBP12.8□□□□□ -0.36
PHRF1-201ENST00000264555 ZFP2Q6ZN57 461 aa12.8□□□□□ -0.36
PHRF1-201ENST00000264555 Q8N1Y9 231 aa12.8□□□□□ -0.36
PHRF1-201ENST00000264555 ANKRD39Q53RE8 183 aa12.8□□□□□ -0.36
PHRF1-201ENST00000264555 CACNA1AO00555 2505 aa12.8□□□□□ -0.36
PHRF1-201ENST00000264555 DEFB125Q8N687 156 aa12.8□□□□□ -0.36
PHRF1-201ENST00000264555 DNAJC30Q96LL9 226 aa12.8□□□□□ -0.36
PHRF1-201ENST00000264555 PRO1854Q9UHT4 67 aa12.8□□□□□ -0.36
PHRF1-201ENST00000264555 TRAV8-3A0A0A6YYJ7 113 aa12.79□□□□□ -0.36
PHRF1-201ENST00000264555 ZNF80P51504 273 aaPredicted RBP12.79□□□□□ -0.36
PHRF1-201ENST00000264555 TNRC6AQ8NDV7 1962 aaKnown RBP12.79□□□□□ -0.36
PHRF1-201ENST00000264555 DEFB1P60022 68 aa12.78□□□□□ -0.36
PHRF1-201ENST00000264555 ZFAND6Q6FIF0 208 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms