RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 NEXN-AS1Q8NBZ9 246 aa14.12□□□□□ -0.15
CPSF3-201ENST00000238112 OR11H1Q8NG94 326 aa14.12□□□□□ -0.15
CPSF3-201ENST00000238112 OR11H2Q8NH07 326 aa14.12□□□□□ -0.15
CPSF3-201ENST00000238112 C10orf105Q8TEF2 133 aa14.12□□□□□ -0.15
CPSF3-201ENST00000238112 HIST1H4GQ99525 98 aa14.12□□□□□ -0.15
CPSF3-201ENST00000238112 ZFHX3Q15911 3703 aa14.11□□□□□ -0.15
CPSF3-201ENST00000238112 CLEC2AQ6UVW9 174 aa14.11□□□□□ -0.15
CPSF3-201ENST00000238112 NEGR1Q7Z3B1 354 aa14.11□□□□□ -0.15
CPSF3-201ENST00000238112 SRD5A1P18405 259 aa14.1□□□□□ -0.15
CPSF3-201ENST00000238112 Q6ZS46 218 aa14.1□□□□□ -0.15
CPSF3-201ENST00000238112 CSTL1Q9H114 145 aa14.1□□□□□ -0.15
CPSF3-201ENST00000238112 MYMXA0A1B0GTQ4 84 aa14.09□□□□□ -0.15
CPSF3-201ENST00000238112 RNF223E7ERA6 249 aa14.09□□□□□ -0.15
CPSF3-201ENST00000238112 NDUFS8O00217 210 aa14.09□□□□□ -0.15
CPSF3-201ENST00000238112 BAALCQ8WXS3 180 aa14.09□□□□□ -0.15
CPSF3-201ENST00000238112 G3V4G9 280 aa14.09□□□□□ -0.15
CPSF3-201ENST00000238112 IGLV1-40P01703 118 aa14.09□□□□□ -0.15
CPSF3-201ENST00000238112 PRORYQ9H606 182 aa14.09□□□□□ -0.15
CPSF3-201ENST00000238112 ID1P41134 155 aa14.08□□□□□ -0.16
CPSF3-201ENST00000238112 FAM159AQ6UWV7 190 aa14.08□□□□□ -0.16
CPSF3-201ENST00000238112 NXPH4O95158 308 aa14.07□□□□□ -0.16
CPSF3-201ENST00000238112 MSMBP08118 114 aa14.07□□□□□ -0.16
CPSF3-201ENST00000238112 ATP5J2P56134 94 aa14.07□□□□□ -0.16
CPSF3-201ENST00000238112 KLLNB2CW77 178 aa14.07□□□□□ -0.16
CPSF3-201ENST00000238112 IGLL5B9A064 214 aa14.07□□□□□ -0.16
CPSF3-201ENST00000238112 C12orf74Q32Q52 190 aa14.07□□□□□ -0.16
CPSF3-201ENST00000238112 IGHV4-30-2A0A087WSY4 118 aa14.06□□□□□ -0.16
CPSF3-201ENST00000238112 PRSS29PA6NIE9 313 aa14.06□□□□□ -0.16
CPSF3-201ENST00000238112 E9PLD3 99 aa14.06□□□□□ -0.16
CPSF3-201ENST00000238112 POM121L12Q8N7R1 296 aa14.06□□□□□ -0.16
CPSF3-201ENST00000238112 SAMD13Q5VXD3 122 aa14.06□□□□□ -0.16
CPSF3-201ENST00000238112 ZNF479Q96JC4 524 aa14.06□□□□□ -0.16
CPSF3-201ENST00000238112 SPTAN1Q13813 2472 aaKnown RBP14.05□□□□□ -0.16
CPSF3-201ENST00000238112 NCOR2Q9Y618 2525 aa14.05□□□□□ -0.16
CPSF3-201ENST00000238112 SPTBN4Q9H254 2564 aa14.05□□□□□ -0.16
CPSF3-201ENST00000238112 TRBV7-3A0A075B6L6 115 aa14.05□□□□□ -0.16
CPSF3-201ENST00000238112 LINC01619G3V211 115 aa14.05□□□□□ -0.16
CPSF3-201ENST00000238112 K7EMT4 169 aa14.05□□□□□ -0.16
CPSF3-201ENST00000238112 SCGB2A2Q13296 93 aa14.05□□□□□ -0.16
CPSF3-201ENST00000238112 CYSLTR1Q9Y271 337 aa14.05□□□□□ -0.16
CPSF3-201ENST00000238112 EDN2P20800 178 aa14.04□□□□□ -0.16
CPSF3-201ENST00000238112 KIF25-AS1Q9Y6Z4 181 aa14.04□□□□□ -0.16
CPSF3-201ENST00000238112 CHD8Q9HCK8 2581 aa14.04□□□□□ -0.16
CPSF3-201ENST00000238112 RIPPLY3P57055 190 aa14.04□□□□□ -0.16
CPSF3-201ENST00000238112 CFHR3Q02985 330 aa14.04□□□□□ -0.16
CPSF3-201ENST00000238112 PRADC1Q9BSG0 188 aa14.04□□□□□ -0.16
CPSF3-201ENST00000238112 DCANP1Q8TF63 244 aa14.03□□□□□ -0.16
CPSF3-201ENST00000238112 WFDC12Q8WWY7 111 aa14.03□□□□□ -0.16
CPSF3-201ENST00000238112 CELSR1Q9NYQ6 3014 aa14.03□□□□□ -0.16
CPSF3-201ENST00000238112 IGHV4OR15-8A0A075B7B6 117 aa14.03□□□□□ -0.16
CPSF3-201ENST00000238112 A0A087WW49 117 aa14.03□□□□□ -0.16
CPSF3-201ENST00000238112 DUSP14O95147 198 aaKnown RBP14.03□□□□□ -0.16
CPSF3-201ENST00000238112 CD7P09564 240 aa14.03□□□□□ -0.16
CPSF3-201ENST00000238112 LINC00315P59091 139 aa14.03□□□□□ -0.16
CPSF3-201ENST00000238112 RPL24P83731 157 aaKnown RBP14.03□□□□□ -0.16
CPSF3-201ENST00000238112 FOXI2Q6ZQN5 318 aa14.03□□□□□ -0.16
CPSF3-201ENST00000238112 LGALS1P09382 135 aaKnown RBP14.02□□□□□ -0.16
CPSF3-201ENST00000238112 RPL32P62910 135 aaKnown RBP14.02□□□□□ -0.16
CPSF3-201ENST00000238112 TP53TG1Q9Y2A0 90 aa14.02□□□□□ -0.16
CPSF3-201ENST00000238112 TRAV12-3A0A0B4J271 114 aa14.02□□□□□ -0.17
CPSF3-201ENST00000238112 F5H697 171 aa14.02□□□□□ -0.17
CPSF3-201ENST00000238112 SUMO4Q6EEV6 95 aa14.02□□□□□ -0.17
CPSF3-201ENST00000238112 JPT2Q9H910 190 aa14.02□□□□□ -0.17
CPSF3-201ENST00000238112 VPS13CQ709C8 3753 aa14.01□□□□□ -0.17
CPSF3-201ENST00000238112 A0A087WWL8 130 aa14.01□□□□□ -0.17
CPSF3-201ENST00000238112 LINC01549A6NIU2 74 aa14.01□□□□□ -0.17
CPSF3-201ENST00000238112 ZNF815PA8K554 130 aa14.01□□□□□ -0.17
CPSF3-201ENST00000238112 TMEM95Q3KNT9 176 aa14.01□□□□□ -0.17
CPSF3-201ENST00000238112 KIR2DL4Q99706 377 aa14.01□□□□□ -0.17
CPSF3-201ENST00000238112 VCYO14598 125 aa14□□□□□ -0.17
CPSF3-201ENST00000238112 SCGB1D4Q6XE38 83 aa14□□□□□ -0.17
CPSF3-201ENST00000238112 ZFP2Q6ZN57 461 aa14□□□□□ -0.17
CPSF3-201ENST00000238112 B4DSR2 109 aa13.99□□□□□ -0.17
CPSF3-201ENST00000238112 RRN3P1Q2M238 152 aa13.99□□□□□ -0.17
CPSF3-201ENST00000238112 AVPP01185 164 aa13.99□□□□□ -0.17
CPSF3-201ENST00000238112 POLR2KP53803 58 aaKnown RBP13.99□□□□□ -0.17
CPSF3-201ENST00000238112 PAPPA-AS1Q5QFB9 102 aa13.99□□□□□ -0.17
CPSF3-201ENST00000238112 ITPR1Q14643 2758 aa13.99□□□□□ -0.17
CPSF3-201ENST00000238112 MUC4Q99102 2169 aa13.99□□□□□ -0.17
CPSF3-201ENST00000238112 A0A1B0GWB2 263 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 F8W1H4 67 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 AGRNO00468 2067 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 CRYGDP07320 174 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 ZNF688P0C7X2 276 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 PSMB8P28062 276 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 DEFB104AQ8WTQ1 72 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 TEX48A0A1B0GUV7 120 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 HERVK_113P61574 105 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 CD300EQ496F6 205 aaPredicted RBP13.98□□□□□ -0.17
CPSF3-201ENST00000238112 ZNF580Q9UK33 172 aa13.98□□□□□ -0.17
CPSF3-201ENST00000238112 IGIPA6NJ69 53 aa13.97□□□□□ -0.17
CPSF3-201ENST00000238112 TSHBP01222 138 aa13.97□□□□□ -0.17
CPSF3-201ENST00000238112 PMVKQ15126 192 aa13.97□□□□□ -0.17
CPSF3-201ENST00000238112 FAM74A4Q5TZK3 123 aa13.97□□□□□ -0.17
CPSF3-201ENST00000238112 TMEM141Q96I45 108 aa13.97□□□□□ -0.17
CPSF3-201ENST00000238112 TMEM238LA0A1B0GVL6 79 aa13.97□□□□□ -0.17
CPSF3-201ENST00000238112 SDHAF1A6NFY7 115 aa13.97□□□□□ -0.17
CPSF3-201ENST00000238112 A6NJY4 79 aa13.97□□□□□ -0.17
CPSF3-201ENST00000238112 H3BMG7 143 aa13.97□□□□□ -0.17
CPSF3-201ENST00000238112 HOXA3O43365 443 aaPredicted RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms