RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 COL25A1Q9BXS0 654 aaPredicted RBP8.05□□□□□ -1.12
USP28-201ENST00000003302 TRAV12-2A0A075B6T6 113 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 TSHBP01222 138 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 Q8N8P6 123 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 CSTL1Q9H114 145 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 ZNF580Q9UK33 172 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 CYSLTR1Q9Y271 337 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 U3KQE9 123 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 ITLN2Q8WWU7 325 aaPredicted RBP8.05□□□□□ -1.12
USP28-201ENST00000003302 LINC01546A6NGU7 62 aa8.04□□□□□ -1.12
USP28-201ENST00000003302 DUSP14O95147 198 aaKnown RBP8.04□□□□□ -1.12
USP28-201ENST00000003302 MGPP08493 103 aa8.04□□□□□ -1.12
USP28-201ENST00000003302 SOCS3O14543 225 aa8.04□□□□□ -1.12
USP28-201ENST00000003302 CRYGDP07320 174 aa8.04□□□□□ -1.12
USP28-201ENST00000003302 C19orf54Q5BKX5 351 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 DUX5Q96PT3 197 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 TRAV41A0A0B4J266 112 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 MINOS1Q5TGZ0 78 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 METTL26Q96S19 204 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 MINOS1-NBL1R4GNA1 71 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 ARL3P36405 182 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 RPL24P83731 157 aaKnown RBP8.03□□□□□ -1.12
USP28-201ENST00000003302 LAGE3Q14657 143 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 C9orf47Q6ZRZ4 202 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 DPM2O94777 84 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 OR9G4Q8NGQ1 327 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 HIF1ANQ9NWT6 349 aa8.03□□□□□ -1.12
USP28-201ENST00000003302 H3BUX3 64 aa8.02□□□□□ -1.12
USP28-201ENST00000003302 GNLYP22749 145 aa8.02□□□□□ -1.12
USP28-201ENST00000003302 TSPEAR-AS2P59090 65 aa8.02□□□□□ -1.12
USP28-201ENST00000003302 NXT2Q9NPJ8 142 aaKnown RBP8.02□□□□□ -1.12
USP28-201ENST00000003302 G3V4G9 280 aa8.02□□□□□ -1.13
USP28-201ENST00000003302 TGFAP01135 160 aa8.02□□□□□ -1.13
USP28-201ENST00000003302 ETDBQ3ZM63 59 aa8.02□□□□□ -1.13
USP28-201ENST00000003302 CEND1Q8N111 149 aa8.02□□□□□ -1.13
USP28-201ENST00000003302 SMIM2Q9BVW6 85 aa8.02□□□□□ -1.13
USP28-201ENST00000003302 LINC00315P59091 139 aa8.02□□□□□ -1.13
USP28-201ENST00000003302 KLRB1Q12918 225 aa8.02□□□□□ -1.13
USP28-201ENST00000003302 C1orf122Q6ZSJ8 110 aa8.02□□□□□ -1.13
USP28-201ENST00000003302 TRRAPQ9Y4A5 3859 aa8.02□□□□□ -1.13
USP28-201ENST00000003302 UBR5O95071 2799 aaPredicted RBP8.01□□□□□ -1.13
USP28-201ENST00000003302 A6NDN8 102 aa8.01□□□□□ -1.13
USP28-201ENST00000003302 HLA-DRB4P13762 266 aa8.01□□□□□ -1.13
USP28-201ENST00000003302 ATP5G2Q06055 141 aa8.01□□□□□ -1.13
USP28-201ENST00000003302 EEF1AKMT3Q96AZ1 226 aa8.01□□□□□ -1.13
USP28-201ENST00000003302 HLA-DRB4X5D2U9 266 aa8.01□□□□□ -1.13
USP28-201ENST00000003302 IGHV4-30-2A0A087WSY4 118 aa8.01□□□□□ -1.13
USP28-201ENST00000003302 RPS20P60866 119 aaKnown RBP8.01□□□□□ -1.13
USP28-201ENST00000003302 BAALCQ8WXS3 180 aa8.01□□□□□ -1.13
USP28-201ENST00000003302 AP1S3Q96PC3 154 aa8.01□□□□□ -1.13
USP28-201ENST00000003302 A0A087WX48 190 aa8□□□□□ -1.13
USP28-201ENST00000003302 PF4V1P10720 104 aa8□□□□□ -1.13
USP28-201ENST00000003302 SUMO2P61956 95 aaKnown RBP8□□□□□ -1.13
USP28-201ENST00000003302 CD300EQ496F6 205 aaPredicted RBP8□□□□□ -1.13
USP28-201ENST00000003302 MORN3Q6PF18 240 aaPredicted RBP8□□□□□ -1.13
USP28-201ENST00000003302 ZFP2Q6ZN57 461 aa8□□□□□ -1.13
USP28-201ENST00000003302 IGLL5B9A064 214 aa8□□□□□ -1.13
USP28-201ENST00000003302 OR4X2Q8NGF9 303 aa8□□□□□ -1.13
USP28-201ENST00000003302 PTH2Q96A98 100 aa8□□□□□ -1.13
USP28-201ENST00000003302 MDFICQ9P1T7 246 aa8□□□□□ -1.13
USP28-201ENST00000003302 GTSF1LQ9H1H1 148 aa8□□□□□ -1.13
USP28-201ENST00000003302 TRAV12-3A0A0B4J271 114 aa8□□□□□ -1.13
USP28-201ENST00000003302 SMIM13P0DJ93 91 aa8□□□□□ -1.13
USP28-201ENST00000003302 C12orf74Q32Q52 190 aa8□□□□□ -1.13
USP28-201ENST00000003302 C2orf66Q6UXQ4 117 aa8□□□□□ -1.13
USP28-201ENST00000003302 TMEM190Q8WZ59 177 aa8□□□□□ -1.13
USP28-201ENST00000003302 SLC50A1Q9BRV3 221 aa8□□□□□ -1.13
USP28-201ENST00000003302 TRBV7-3A0A075B6L6 115 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 IGHV3-64A0A075B6Q5 118 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 FAM74A4Q5TZK3 123 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 KLK9Q9UKQ9 250 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 RBAKDNA6NC62 111 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 S100A4P26447 101 aaKnown RBP7.99□□□□□ -1.13
USP28-201ENST00000003302 NEXN-AS1Q8NBZ9 246 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 LGALS1P09382 135 aaKnown RBP7.99□□□□□ -1.13
USP28-201ENST00000003302 RHPN1-AS1Q9BWJ2 59 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 C11orf86A6NJI1 115 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 PROK1P58294 105 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 SCGB3A1Q96QR1 104 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 TM2D2Q9BX73 214 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 PHLDA3Q9Y5J5 127 aa7.99□□□□□ -1.13
USP28-201ENST00000003302 SLC25A16P16260 332 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 FHL3Q13643 280 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 MYOZ3Q8TDC0 251 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 HIST1H4GQ99525 98 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 PRADC1Q9BSG0 188 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 SIVA1O15304 175 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 EIF4EBP3O60516 100 aaPredicted RBP7.98□□□□□ -1.13
USP28-201ENST00000003302 ZNF688P0C7X2 276 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 P0DMU3 169 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 FAM231AP0DMU4 169 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 FAM231CP0DMU5 169 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 KIF25-AS1Q9Y6Z4 181 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 K7ERU9 68 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 FABP2P12104 132 aa7.98□□□□□ -1.13
USP28-201ENST00000003302 SMCPP49901 116 aaPredicted RBP7.98□□□□□ -1.13
USP28-201ENST00000003302 TRBV7-1A0A0A6YYK4 115 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 SRSF2Q01130 221 aaKnown RBP7.97□□□□□ -1.13
USP28-201ENST00000003302 C18orf65Q6ZTR6 163 aa7.97□□□□□ -1.13
USP28-201ENST00000003302 ZNRF2Q8NHG8 242 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms