RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 OTORQ9NRC9 128 aa10.88□□□□□ -0.67
CLN3-246ENST00000636228 MBD2Q9UBB5 411 aa10.88□□□□□ -0.67
CLN3-246ENST00000636228 HSPB11Q9Y547 144 aa10.88□□□□□ -0.67
CLN3-246ENST00000636228 LENEPQ9Y5L5 61 aa10.88□□□□□ -0.67
CLN3-246ENST00000636228 TRAV8-1A0A0A6YYK1 113 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 M0R2P5 195 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 GCSHP23434 173 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 CYCSP99999 105 aaKnown RBP10.87□□□□□ -0.67
CLN3-246ENST00000636228 Q6ZNX1 250 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 NHLRC2Q8NBF2 726 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 CMTM2Q8TAZ6 248 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 SCGB1C1Q8TD33 95 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 FRZBQ92765 325 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 SGK494Q96LW2 274 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 TXNDC17Q9BRA2 123 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 WFDC1Q9HC57 220 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 VPS13BQ7Z7G8 4022 aa10.87□□□□□ -0.67
CLN3-246ENST00000636228 HMGB3O15347 200 aaKnown RBP10.86□□□□□ -0.67
CLN3-246ENST00000636228 TYMSP04818 313 aa10.86□□□□□ -0.67
CLN3-246ENST00000636228 TAS2R45P59539 299 aa10.86□□□□□ -0.67
CLN3-246ENST00000636228 GNG5P63218 68 aa10.86□□□□□ -0.67
CLN3-246ENST00000636228 TDRG1Q3Y452 100 aa10.86□□□□□ -0.67
CLN3-246ENST00000636228 TRAV21A0A0B4J279 112 aa10.85□□□□□ -0.67
CLN3-246ENST00000636228 MPC2O95563 127 aa10.85□□□□□ -0.67
CLN3-246ENST00000636228 RPL12P30050 165 aaKnown RBP10.85□□□□□ -0.67
CLN3-246ENST00000636228 TMED6Q8WW62 240 aa10.85□□□□□ -0.67
CLN3-246ENST00000636228 MED28Q9H204 178 aa10.85□□□□□ -0.67
CLN3-246ENST00000636228 TREM1Q9NP99 234 aa10.85□□□□□ -0.67
CLN3-246ENST00000636228 IGHV3-73A0A0B4J1V6 119 aa10.84□□□□□ -0.67
CLN3-246ENST00000636228 IGHV3-38A0A0C4DH36 116 aa10.84□□□□□ -0.67
CLN3-246ENST00000636228 K7EP13 123 aa10.84□□□□□ -0.67
CLN3-246ENST00000636228 PSCAO43653 123 aa10.84□□□□□ -0.67
CLN3-246ENST00000636228 GATA1P15976 413 aaPredicted RBP10.84□□□□□ -0.67
CLN3-246ENST00000636228 PPT1P50897 306 aa10.84□□□□□ -0.67
CLN3-246ENST00000636228 RAB2AP61019 212 aa10.84□□□□□ -0.67
CLN3-246ENST00000636228 SDF2L1Q9HCN8 221 aa10.84□□□□□ -0.67
CLN3-246ENST00000636228 IGLV5-52A0A0A0MRZ9 124 aa10.83□□□□□ -0.68
CLN3-246ENST00000636228 A0A1W2PPV4 95 aa10.83□□□□□ -0.68
CLN3-246ENST00000636228 LRCOL1A6NCL2 159 aa10.83□□□□□ -0.68
CLN3-246ENST00000636228 FAM74A1Q5RGS3 127 aa10.83□□□□□ -0.68
CLN3-246ENST00000636228 DPPA3Q6W0C5 159 aa10.83□□□□□ -0.68
CLN3-246ENST00000636228 C10orf126Q8N4M7 172 aa10.83□□□□□ -0.68
CLN3-246ENST00000636228 Q9HAA7 133 aa10.83□□□□□ -0.68
CLN3-246ENST00000636228 IGHV3-30P01768 117 aa10.82□□□□□ -0.68
CLN3-246ENST00000636228 IGHV3-33P01772 117 aa10.82□□□□□ -0.68
CLN3-246ENST00000636228 IGHV3-30-3P0DP02 117 aa10.82□□□□□ -0.68
CLN3-246ENST00000636228 IGHV3-30-5P0DP03 117 aa10.82□□□□□ -0.68
CLN3-246ENST00000636228 ZNF80P51504 273 aaPredicted RBP10.82□□□□□ -0.68
CLN3-246ENST00000636228 ACOT6Q3I5F7 207 aaPredicted RBP10.82□□□□□ -0.68
CLN3-246ENST00000636228 ZNF876PQ49A33 203 aa10.82□□□□□ -0.68
CLN3-246ENST00000636228 SLC25A29Q8N8R3 303 aa10.82□□□□□ -0.68
CLN3-246ENST00000636228 ASB13Q8WXK3 278 aa10.82□□□□□ -0.68
CLN3-246ENST00000636228 C11orf21Q9P2W6 132 aa10.82□□□□□ -0.68
CLN3-246ENST00000636228 FBLL1A6NHQ2 334 aaKnown RBP10.81□□□□□ -0.68
CLN3-246ENST00000636228 OR10J3Q5JRS4 329 aa10.81□□□□□ -0.68
CLN3-246ENST00000636228 CFAP126Q5VTH2 177 aa10.81□□□□□ -0.68
CLN3-246ENST00000636228 TMEM75Q8N9X5 138 aa10.81□□□□□ -0.68
CLN3-246ENST00000636228 OR10G9Q8NGN4 311 aa10.81□□□□□ -0.68
CLN3-246ENST00000636228 OR10G7Q8NGN6 311 aa10.81□□□□□ -0.68
CLN3-246ENST00000636228 DNAH8Q96JB1 4490 aa10.81□□□□□ -0.68
CLN3-246ENST00000636228 MYCBP2O75592 4640 aa10.81□□□□□ -0.68
CLN3-246ENST00000636228 IBA57-AS1B1ANH7 110 aa10.8□□□□□ -0.68
CLN3-246ENST00000636228 RS1O15537 224 aa10.8□□□□□ -0.68
CLN3-246ENST00000636228 PET100P0DJ07 73 aa10.8□□□□□ -0.68
CLN3-246ENST00000636228 TIRAPP58753 221 aa10.8□□□□□ -0.68
CLN3-246ENST00000636228 LINC01556Q5JQF7 62 aa10.8□□□□□ -0.68
CLN3-246ENST00000636228 PQLC2Q6ZP29 291 aa10.8□□□□□ -0.68
CLN3-246ENST00000636228 SH2D6Q7Z4S9 175 aa10.8□□□□□ -0.68
CLN3-246ENST00000636228 KCNS1Q96KK3 526 aa10.8□□□□□ -0.68
CLN3-246ENST00000636228 TRAV8-6A0A0B4J262 113 aa10.79□□□□□ -0.68
CLN3-246ENST00000636228 FAM229AH3BQW9 127 aa10.79□□□□□ -0.68
CLN3-246ENST00000636228 PFN1P07737 140 aaKnown RBP10.79□□□□□ -0.68
CLN3-246ENST00000636228 GIPP09681 153 aaPredicted RBP10.79□□□□□ -0.68
CLN3-246ENST00000636228 Q8N814 137 aa10.79□□□□□ -0.68
CLN3-246ENST00000636228 FAM30AQ9NZY2 134 aa10.79□□□□□ -0.68
CLN3-246ENST00000636228 PGPEP1LA6NFU8 196 aa10.78□□□□□ -0.68
CLN3-246ENST00000636228 ARL14EPLP0DKL9 152 aa10.78□□□□□ -0.68
CLN3-246ENST00000636228 Q8N3U1 123 aa10.78□□□□□ -0.68
CLN3-246ENST00000636228 ARL6IP6Q8N6S5 226 aa10.78□□□□□ -0.68
CLN3-246ENST00000636228 PRADC1Q9BSG0 188 aa10.78□□□□□ -0.68
CLN3-246ENST00000636228 A0A1B0GVG6 124 aa10.77□□□□□ -0.69
CLN3-246ENST00000636228 GCGP01275 180 aa10.77□□□□□ -0.69
CLN3-246ENST00000636228 TCRAP04437 139 aa10.77□□□□□ -0.69
CLN3-246ENST00000636228 NDFIP1Q9BT67 221 aa10.77□□□□□ -0.69
CLN3-246ENST00000636228 PSG8Q9UQ74 426 aa10.77□□□□□ -0.69
CLN3-246ENST00000636228 TRBV6-4A0A1B0GX49 114 aa10.76□□□□□ -0.69
CLN3-246ENST00000636228 WFDC2Q14508 124 aa10.76□□□□□ -0.69
CLN3-246ENST00000636228 RHOHQ15669 191 aa10.76□□□□□ -0.69
CLN3-246ENST00000636228 ZNF506Q5JVG8 444 aa10.76□□□□□ -0.69
CLN3-246ENST00000636228 LELP1Q5T871 98 aa10.76□□□□□ -0.69
CLN3-246ENST00000636228 Q6ZSN1 163 aa10.76□□□□□ -0.69
CLN3-246ENST00000636228 PRNTQ86SH4 94 aa10.76□□□□□ -0.69
CLN3-246ENST00000636228 HSD17B11Q8NBQ5 300 aa10.76□□□□□ -0.69
CLN3-246ENST00000636228 NTN5Q8WTR8 489 aaPredicted RBP10.76□□□□□ -0.69
CLN3-246ENST00000636228 C9orf85Q96MD7 179 aa10.76□□□□□ -0.69
CLN3-246ENST00000636228 hCG_2014768A0A024R1R8 64 aa10.75□□□□□ -0.69
CLN3-246ENST00000636228 TAAR5O14804 337 aa10.75□□□□□ -0.69
CLN3-246ENST00000636228 IGLV2-11P01706 119 aa10.75□□□□□ -0.69
CLN3-246ENST00000636228 STAG3L2P0CL84 134 aa10.75□□□□□ -0.69
CLN3-246ENST00000636228 STAG3L3P0CL85 134 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 162.6 ms