RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 MS4A6AQ9H2W1 248 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 LAMTOR2Q9Y2Q5 125 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 SMAD5-AS1Q9Y6J3 95 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 U3KQE9 123 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 TEP1Q99973 2627 aaKnown RBP8.87□□□□□ -0.99
VRK3-223ENST00000601341 OR4C46A6NHA9 309 aa8.87□□□□□ -0.99
VRK3-223ENST00000601341 IGLC6P0CF74 106 aa8.87□□□□□ -0.99
VRK3-223ENST00000601341 LCN12Q6JVE5 192 aa8.87□□□□□ -0.99
VRK3-223ENST00000601341 OR1N2Q8NGR9 330 aa8.87□□□□□ -0.99
VRK3-223ENST00000601341 OR10AG1Q8NH19 301 aa8.87□□□□□ -0.99
VRK3-223ENST00000601341 C8orf49Q96NF6 230 aa8.87□□□□□ -0.99
VRK3-223ENST00000601341 LGALS9O00182 355 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 PPBPP02775 128 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 DEFB136Q30KP8 78 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 LYZL1Q6UWQ5 148 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 ORMDL3Q8N138 153 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.86□□□□□ -0.99
VRK3-223ENST00000601341 IGHV3OR16-13A0A075B7E8 117 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 IGKV2-40A0A087WW87 121 aaPredicted RBP8.86□□□□□ -0.99
VRK3-223ENST00000601341 IGHV3-74A0A0B4J1X5 117 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 IGHV3-66A0A0C4DH42 116 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 A0A1W2PRX2 142 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 FABP5P3A8MUU1 101 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 IGKV2D-40P01614 121 aaPredicted RBP8.86□□□□□ -0.99
VRK3-223ENST00000601341 IGLL1P15814 213 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 SYNJ2BPP57105 145 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 LINC01559Q495D7 138 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 TM4SF20Q53R12 229 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 LINC01545Q5VT33 79 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 C8orf86Q6ZUL3 223 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 FA2HQ7L5A8 372 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 ASCL2Q99929 193 aa8.86□□□□□ -0.99
VRK3-223ENST00000601341 IGHV3-49A0A0A0MS15 119 aa8.85□□□□□ -0.99
VRK3-223ENST00000601341 IGHV7-4-1A0A0J9YVY3 117 aa8.85□□□□□ -0.99
VRK3-223ENST00000601341 HSBP1L1C9JCN9 74 aa8.85□□□□□ -0.99
VRK3-223ENST00000601341 FER1L6-AS1Q8NA97 138 aa8.85□□□□□ -0.99
VRK3-223ENST00000601341 PRSS3P2Q8NHM4 247 aa8.85□□□□□ -0.99
VRK3-223ENST00000601341 LENEPQ9Y5L5 61 aa8.85□□□□□ -0.99
VRK3-223ENST00000601341 HIST1H1AQ02539 215 aaPredicted RBP8.84□□□□□ -0.99
VRK3-223ENST00000601341 HIST2H2BDQ6DRA6 164 aa8.84□□□□□ -0.99
VRK3-223ENST00000601341 RAX2Q96IS3 184 aa8.84□□□□□ -0.99
VRK3-223ENST00000601341 ZNF747Q9BV97 191 aa8.84□□□□□ -0.99
VRK3-223ENST00000601341 RHPN1-AS1Q9BWJ2 59 aa8.84□□□□□ -0.99
VRK3-223ENST00000601341 SMPXQ9UHP9 88 aa8.84□□□□□ -0.99
VRK3-223ENST00000601341 TMEM213A2RRL7 107 aa8.84□□□□□ -1
VRK3-223ENST00000601341 LINC01546A6NGU7 62 aa8.84□□□□□ -1
VRK3-223ENST00000601341 CCL24O00175 119 aa8.84□□□□□ -1
VRK3-223ENST00000601341 DLEU1O43261 78 aa8.84□□□□□ -1
VRK3-223ENST00000601341 SLURP1P55000 103 aa8.84□□□□□ -1
VRK3-223ENST00000601341 FHL3Q13643 280 aa8.84□□□□□ -1
VRK3-223ENST00000601341 PSMG4Q5JS54 123 aa8.84□□□□□ -1
VRK3-223ENST00000601341 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.84□□□□□ -1
VRK3-223ENST00000601341 NDUFA11Q86Y39 141 aa8.84□□□□□ -1
VRK3-223ENST00000601341 PRELID3AQ96N28 172 aa8.84□□□□□ -1
VRK3-223ENST00000601341 DUX3Q96PT4 197 aa8.84□□□□□ -1
VRK3-223ENST00000601341 VGLL1Q99990 258 aa8.84□□□□□ -1
VRK3-223ENST00000601341 PEMTQ9UBM1 199 aa8.84□□□□□ -1
VRK3-223ENST00000601341 M0QZ24 198 aa8.83□□□□□ -1
VRK3-223ENST00000601341 KRTAP10-3P60369 221 aa8.83□□□□□ -1
VRK3-223ENST00000601341 ATOH7Q8N100 152 aa8.83□□□□□ -1
VRK3-223ENST00000601341 GLMPQ8WWB7 406 aa8.83□□□□□ -1
VRK3-223ENST00000601341 PMCHL2Q9BQD1 86 aa8.83□□□□□ -1
VRK3-223ENST00000601341 TMEM208Q9BTX3 173 aa8.83□□□□□ -1
VRK3-223ENST00000601341 ZNF25P17030 456 aaPredicted RBP8.82□□□□□ -1
VRK3-223ENST00000601341 MRPL51Q4U2R6 128 aaKnown RBP8.82□□□□□ -1
VRK3-223ENST00000601341 C9orf47Q6ZRZ4 202 aa8.82□□□□□ -1
VRK3-223ENST00000601341 TPPP3Q9BW30 176 aa8.82□□□□□ -1
VRK3-223ENST00000601341 ADARB2-AS1A8MUL3 147 aa8.81□□□□□ -1
VRK3-223ENST00000601341 D6R8Y8 96 aa8.81□□□□□ -1
VRK3-223ENST00000601341 ZNF80P51504 273 aaPredicted RBP8.81□□□□□ -1
VRK3-223ENST00000601341 NSUN5P1Q3KNT7 163 aa8.81□□□□□ -1
VRK3-223ENST00000601341 MAJINQ3KP22 176 aa8.81□□□□□ -1
VRK3-223ENST00000601341 ZNF575Q86XF7 245 aa8.81□□□□□ -1
VRK3-223ENST00000601341 DEFB125Q8N687 156 aa8.81□□□□□ -1
VRK3-223ENST00000601341 OR9G4Q8NGQ1 327 aa8.81□□□□□ -1
VRK3-223ENST00000601341 ORAOV1Q8WV07 137 aa8.81□□□□□ -1
VRK3-223ENST00000601341 DLX4Q92988 240 aaPredicted RBP8.81□□□□□ -1
VRK3-223ENST00000601341 SIGLEC8Q9NYZ4 499 aa8.81□□□□□ -1
VRK3-223ENST00000601341 ZNF138P52744 262 aa8.81□□□□□ -1
VRK3-223ENST00000601341 LGALS9BQ3B8N2 356 aa8.81□□□□□ -1
VRK3-223ENST00000601341 LGALS9CQ6DKI2 356 aa8.81□□□□□ -1
VRK3-223ENST00000601341 SLC25A34Q6PIV7 304 aa8.81□□□□□ -1
VRK3-223ENST00000601341 LINC00173Q6ZV60 143 aa8.81□□□□□ -1
VRK3-223ENST00000601341 AMN1Q8IY45 258 aa8.81□□□□□ -1
VRK3-223ENST00000601341 IGHV4-4A0A075B6R2 117 aa8.8□□□□□ -1
VRK3-223ENST00000601341 HBDP02042 147 aa8.8□□□□□ -1
VRK3-223ENST00000601341 ORM1P02763 201 aa8.8□□□□□ -1
VRK3-223ENST00000601341 CSN3P07498 182 aa8.8□□□□□ -1
VRK3-223ENST00000601341 EDN2P20800 178 aa8.8□□□□□ -1
VRK3-223ENST00000601341 CKS2P33552 79 aa8.8□□□□□ -1
VRK3-223ENST00000601341 IFI27P40305 119 aaPredicted RBP8.8□□□□□ -1
VRK3-223ENST00000601341 RPL11P62913 178 aaKnown RBP8.8□□□□□ -1
VRK3-223ENST00000601341 TWIST1Q15672 202 aa8.8□□□□□ -1
VRK3-223ENST00000601341 ZNF124Q15973 351 aa8.8□□□□□ -1
VRK3-223ENST00000601341 TMEM78Q5T7P6 136 aa8.8□□□□□ -1
VRK3-223ENST00000601341 C12orf54Q6X4T0 127 aa8.8□□□□□ -1
VRK3-223ENST00000601341 STPG4Q8N801 248 aa8.8□□□□□ -1
VRK3-223ENST00000601341 Q8TAT8 98 aa8.8□□□□□ -1
VRK3-223ENST00000601341 SCRT2Q9NQ03 307 aa8.8□□□□□ -1
VRK3-223ENST00000601341 ATRQ13535 2644 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms