RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 TFPI2P48307 235 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 ZNF493Q6ZR52 646 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 FAM19A2Q8N3H0 131 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 SVIPQ8NHG7 77 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 URB1-AS1Q96HZ7 61 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 RNF114Q9Y508 228 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 LENEPQ9Y5L5 61 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 NF1P21359 2839 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 C2orf70A6NJV1 201 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 M0QZ24 198 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 ADAMTSL5Q6ZMM2 481 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 FAM19A4Q96LR4 140 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 DUX3Q96PT4 197 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 JMJD8Q96S16 334 aa12.81□□□□□ -0.36
SHKBP1-216ENST00000598201 ZNF324O75467 553 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-216ENST00000598201 AMTP48728 403 aa12.8□□□□□ -0.36
SHKBP1-216ENST00000598201 MSRB1Q9NZV6 116 aa12.8□□□□□ -0.36
SHKBP1-216ENST00000598201 NTF3P20783 257 aa12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 KIR3DS1Q14943 382 aa12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 KHDC1LQ5JSQ8 128 aa12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 ID1P41134 155 aa12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 TWIST1Q15672 202 aa12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 RNASEKQ6P5S7 137 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 NIT1Q86X76 327 aa12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 OR11H1Q8NG94 326 aa12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 C4orf3Q8WVX3 66 aa12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 JMJD1CQ15652 2540 aa12.79□□□□□ -0.36
SHKBP1-216ENST00000598201 AMN1Q8IY45 258 aa12.78□□□□□ -0.36
SHKBP1-216ENST00000598201 CNFNQ9BYD5 112 aa12.78□□□□□ -0.36
SHKBP1-216ENST00000598201 GOLT1BQ9Y3E0 138 aa12.78□□□□□ -0.36
SHKBP1-216ENST00000598201 LINC01619G3V211 115 aa12.77□□□□□ -0.36
SHKBP1-216ENST00000598201 ZNF688P0C7X2 276 aa12.77□□□□□ -0.36
SHKBP1-216ENST00000598201 K7EQG2 157 aa12.77□□□□□ -0.37
SHKBP1-216ENST00000598201 SCGB1D1O95968 90 aa12.77□□□□□ -0.37
SHKBP1-216ENST00000598201 FAM104BQ5XKR9 115 aa12.77□□□□□ -0.37
SHKBP1-216ENST00000598201 PRO1933Q9H354 126 aa12.77□□□□□ -0.37
SHKBP1-216ENST00000598201 DLEU1O43261 78 aa12.76□□□□□ -0.37
SHKBP1-216ENST00000598201 PSMG4Q5JS54 123 aa12.76□□□□□ -0.37
SHKBP1-216ENST00000598201 SAMD13Q5VXD3 122 aa12.76□□□□□ -0.37
SHKBP1-216ENST00000598201 KLHL30-AS1Q8NEE0 82 aa12.76□□□□□ -0.37
SHKBP1-216ENST00000598201 OR1N2Q8NGR9 330 aa12.76□□□□□ -0.37
SHKBP1-216ENST00000598201 HSBP1O75506 76 aa12.76□□□□□ -0.37
SHKBP1-216ENST00000598201 RNASE4P34096 147 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-216ENST00000598201 MRPL52Q86TS9 123 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-216ENST00000598201 PRIMA1Q86XR5 153 aa12.76□□□□□ -0.37
SHKBP1-216ENST00000598201 RNASE1P07998 156 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-216ENST00000598201 APRG1Q8IVJ8 170 aa12.75□□□□□ -0.37
SHKBP1-216ENST00000598201 C11orf44Q8N8P7 122 aa12.75□□□□□ -0.37
SHKBP1-216ENST00000598201 WFDC12Q8WWY7 111 aa12.75□□□□□ -0.37
SHKBP1-216ENST00000598201 NAGKQ9UJ70 344 aa12.75□□□□□ -0.37
SHKBP1-216ENST00000598201 G0S2P27469 103 aa12.74□□□□□ -0.37
SHKBP1-216ENST00000598201 MRPL51Q4U2R6 128 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-216ENST00000598201 OR10AG1Q8NH19 301 aa12.74□□□□□ -0.37
SHKBP1-216ENST00000598201 DPF1Q92782 380 aa12.74□□□□□ -0.37
SHKBP1-216ENST00000598201 TRAV21A0A0B4J279 112 aa12.74□□□□□ -0.37
SHKBP1-216ENST00000598201 D6R8Y8 96 aa12.74□□□□□ -0.37
SHKBP1-216ENST00000598201 PMCHL1Q16048 86 aa12.74□□□□□ -0.37
SHKBP1-216ENST00000598201 DLX4Q92988 240 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-216ENST00000598201 U3KQK5 164 aa12.74□□□□□ -0.37
SHKBP1-216ENST00000598201 TRBV7-9A0A0J9YWB2 115 aa12.73□□□□□ -0.37
SHKBP1-216ENST00000598201 CSN3P07498 182 aa12.73□□□□□ -0.37
SHKBP1-216ENST00000598201 ZNF25P17030 456 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-216ENST00000598201 KRTDAPP60985 99 aa12.73□□□□□ -0.37
SHKBP1-216ENST00000598201 TMEM191AQ9H0A3 160 aa12.73□□□□□ -0.37
SHKBP1-216ENST00000598201 EREGO14944 169 aa12.73□□□□□ -0.37
SHKBP1-216ENST00000598201 SNRPD3P62318 126 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-216ENST00000598201 OR9G4Q8NGQ1 327 aa12.73□□□□□ -0.37
SHKBP1-216ENST00000598201 M0R2Z0 102 aa12.72□□□□□ -0.37
SHKBP1-216ENST00000598201 CD28P10747 220 aa12.72□□□□□ -0.37
SHKBP1-216ENST00000598201 ANXA2RQ3ZCQ2 193 aa12.72□□□□□ -0.37
SHKBP1-216ENST00000598201 RNF185Q96GF1 192 aa12.72□□□□□ -0.37
SHKBP1-216ENST00000598201 SORL1Q92673 2214 aa12.72□□□□□ -0.37
SHKBP1-216ENST00000598201 A0A0J9YX75 114 aa12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 KLLNB2CW77 178 aa12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 SMKR1H3BMG3 65 aa12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 H3BVH4 76 aa12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 SNAI2O43623 268 aa12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 DMRTA1Q5VZB9 504 aa12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 ZNF664Q8N3J9 261 aa12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 Q8N976 141 aa12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 LINC01006Q8NI28 216 aa12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 CHCHD1Q96BP2 118 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-216ENST00000598201 A0A1W2PRX2 142 aa12.71□□□□□ -0.38
SHKBP1-216ENST00000598201 M0R143 59 aa12.71□□□□□ -0.38
SHKBP1-216ENST00000598201 SPRY2O43597 315 aa12.71□□□□□ -0.38
SHKBP1-216ENST00000598201 OR5AL1P0C617 328 aa12.71□□□□□ -0.38
SHKBP1-216ENST00000598201 PRELID3AQ96N28 172 aa12.71□□□□□ -0.38
SHKBP1-216ENST00000598201 TMEM208Q9BTX3 173 aa12.71□□□□□ -0.38
SHKBP1-216ENST00000598201 IGHV1-24A0A0C4DH33 117 aa12.7□□□□□ -0.38
SHKBP1-216ENST00000598201 IGKV3-20P01619 116 aa12.7□□□□□ -0.38
SHKBP1-216ENST00000598201 C3orf79P0CE67 100 aa12.7□□□□□ -0.38
SHKBP1-216ENST00000598201 ORMDL3Q8N138 153 aa12.7□□□□□ -0.38
SHKBP1-216ENST00000598201 RAX2Q96IS3 184 aa12.7□□□□□ -0.38
SHKBP1-216ENST00000598201 TIMM8BQ9Y5J9 83 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-216ENST00000598201 GAS8-AS1O95177 125 aa12.69□□□□□ -0.38
SHKBP1-216ENST00000598201 NCR2O95944 276 aa12.69□□□□□ -0.38
SHKBP1-216ENST00000598201 C16orf95Q9H693 158 aa12.69□□□□□ -0.38
SHKBP1-216ENST00000598201 PEMTQ9UBM1 199 aa12.69□□□□□ -0.38
SHKBP1-216ENST00000598201 GNRH2O43555 120 aa12.69□□□□□ -0.38
SHKBP1-216ENST00000598201 EVI2AP22794 236 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms