RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 KHDC3LQ587J8 217 aa14.26□□□□□ -0.13
VPS53-216ENST00000574029 Q6AWC8 147 aa14.26□□□□□ -0.13
VPS53-216ENST00000574029 OR11H4Q8NGC9 324 aa14.26□□□□□ -0.13
VPS53-216ENST00000574029 OR10G9Q8NGN4 311 aa14.26□□□□□ -0.13
VPS53-216ENST00000574029 OR10G7Q8NGN6 311 aa14.26□□□□□ -0.13
VPS53-216ENST00000574029 SPXQ9BT56 116 aa14.26□□□□□ -0.13
VPS53-216ENST00000574029 A0A1W2PPV4 95 aa14.25□□□□□ -0.13
VPS53-216ENST00000574029 OR7C2O60412 319 aa14.25□□□□□ -0.13
VPS53-216ENST00000574029 ORM1P02763 201 aa14.25□□□□□ -0.13
VPS53-216ENST00000574029 CSN1S1P47710 185 aa14.25□□□□□ -0.13
VPS53-216ENST00000574029 RAB2AP61019 212 aa14.25□□□□□ -0.13
VPS53-216ENST00000574029 ZNF345Q14585 488 aa14.25□□□□□ -0.13
VPS53-216ENST00000574029 Q5VSD8 79 aa14.25□□□□□ -0.13
VPS53-216ENST00000574029 CYTL1Q9NRR1 136 aa14.25□□□□□ -0.13
VPS53-216ENST00000574029 GYPEP15421 78 aa14.24□□□□□ -0.13
VPS53-216ENST00000574029 EVI2AP22794 236 aa14.24□□□□□ -0.13
VPS53-216ENST00000574029 RANP62826 216 aaKnown RBP14.24□□□□□ -0.13
VPS53-216ENST00000574029 PQLC2Q6ZP29 291 aa14.24□□□□□ -0.13
VPS53-216ENST00000574029 KCNRGQ8N5I3 272 aa14.24□□□□□ -0.13
VPS53-216ENST00000574029 PCNPQ8WW12 178 aaKnown RBP14.24□□□□□ -0.13
VPS53-216ENST00000574029 FRZBQ92765 325 aa14.24□□□□□ -0.13
VPS53-216ENST00000574029 LENEPQ9Y5L5 61 aa14.24□□□□□ -0.13
VPS53-216ENST00000574029 TRGV11A0A075B6L2 103 aa14.23□□□□□ -0.13
VPS53-216ENST00000574029 TMEM183BQ1AE95 376 aa14.23□□□□□ -0.13
VPS53-216ENST00000574029 FAM159AQ6UWV7 190 aa14.23□□□□□ -0.13
VPS53-216ENST00000574029 TMEM183AQ8IXX5 376 aa14.23□□□□□ -0.13
VPS53-216ENST00000574029 SH3BGRL3Q9H299 93 aa14.23□□□□□ -0.13
VPS53-216ENST00000574029 A0A0D9SG52 128 aa14.22□□□□□ -0.13
VPS53-216ENST00000574029 TXNDC17Q9BRA2 123 aa14.22□□□□□ -0.13
VPS53-216ENST00000574029 C9JCJ5 164 aa14.21□□□□□ -0.13
VPS53-216ENST00000574029 DIRC3C9JPN6 131 aa14.21□□□□□ -0.13
VPS53-216ENST00000574029 GCSHP23434 173 aa14.21□□□□□ -0.13
VPS53-216ENST00000574029 CDC34P49427 236 aaPredicted RBP14.21□□□□□ -0.13
VPS53-216ENST00000574029 UBE2L3P68036 154 aaKnown RBP14.21□□□□□ -0.13
VPS53-216ENST00000574029 TDRG1Q3Y452 100 aa14.21□□□□□ -0.13
VPS53-216ENST00000574029 TRAV4A0A0B4J268 109 aa14.2□□□□□ -0.14
VPS53-216ENST00000574029 STAG3L2P0CL84 134 aa14.2□□□□□ -0.14
VPS53-216ENST00000574029 STAG3L3P0CL85 134 aa14.2□□□□□ -0.14
VPS53-216ENST00000574029 TCTE3Q8IZS6 198 aa14.2□□□□□ -0.14
VPS53-216ENST00000574029 TMED6Q8WW62 240 aa14.2□□□□□ -0.14
VPS53-216ENST00000574029 RAB24Q969Q5 203 aa14.2□□□□□ -0.14
VPS53-216ENST00000574029 FAT1Q14517 4588 aa14.2□□□□□ -0.14
VPS53-216ENST00000574029 EIF3GO75821 320 aaKnown RBP eCLIP14.19□□□□□ -0.14
VPS53-216ENST00000574029 CRYGDP07320 174 aa14.19□□□□□ -0.14
VPS53-216ENST00000574029 C10orf126Q8N4M7 172 aa14.19□□□□□ -0.14
VPS53-216ENST00000574029 SUN5Q8TC36 379 aa14.19□□□□□ -0.14
VPS53-216ENST00000574029 OR4C5Q8NGB2 326 aa14.18□□□□□ -0.14
VPS53-216ENST00000574029 ACTR3CQ9C0K3 210 aaPredicted RBP14.18□□□□□ -0.14
VPS53-216ENST00000574029 LOC100131303A0A0U1RQF7 123 aa14.17□□□□□ -0.14
VPS53-216ENST00000574029 M0R2P5 195 aa14.17□□□□□ -0.14
VPS53-216ENST00000574029 GNRH2O43555 120 aa14.17□□□□□ -0.14
VPS53-216ENST00000574029 TIRAPP58753 221 aa14.17□□□□□ -0.14
VPS53-216ENST00000574029 SH2D6Q7Z4S9 175 aa14.17□□□□□ -0.14
VPS53-216ENST00000574029 ARL6IP6Q8N6S5 226 aa14.17□□□□□ -0.14
VPS53-216ENST00000574029 NAGKQ9UJ70 344 aa14.17□□□□□ -0.14
VPS53-216ENST00000574029 IGHV3-16A0A0C4DH30 117 aa14.16□□□□□ -0.14
VPS53-216ENST00000574029 HMGB3O15347 200 aaKnown RBP14.16□□□□□ -0.14
VPS53-216ENST00000574029 SMR3BP02814 79 aaPredicted RBP14.16□□□□□ -0.14
VPS53-216ENST00000574029 ARL14EPLP0DKL9 152 aa14.16□□□□□ -0.14
VPS53-216ENST00000574029 OTORQ9NRC9 128 aa14.16□□□□□ -0.14
VPS53-216ENST00000574029 LRCOL1A6NCL2 159 aa14.15□□□□□ -0.14
VPS53-216ENST00000574029 BCL2L11O43521 198 aa14.15□□□□□ -0.14
VPS53-216ENST00000574029 CXorf1O96002 111 aa14.15□□□□□ -0.14
VPS53-216ENST00000574029 HYLS1Q96M11 299 aa14.15□□□□□ -0.14
VPS53-216ENST00000574029 IGHV3-38A0A0C4DH36 116 aa14.14□□□□□ -0.15
VPS53-216ENST00000574029 KANTRA0A1W2PQU2 76 aa14.14□□□□□ -0.15
VPS53-216ENST00000574029 GATA1P15976 413 aaPredicted RBP14.14□□□□□ -0.15
VPS53-216ENST00000574029 GCHFRP30047 84 aa14.14□□□□□ -0.15
VPS53-216ENST00000574029 ZNF726P1Q15940 193 aa14.14□□□□□ -0.15
VPS53-216ENST00000574029 FAM74A1Q5RGS3 127 aa14.14□□□□□ -0.15
VPS53-216ENST00000574029 AKR1C8PQ5T2L2 129 aa14.14□□□□□ -0.15
VPS53-216ENST00000574029 TMUB2Q71RG4 321 aa14.14□□□□□ -0.15
VPS53-216ENST00000574029 TRAV21A0A0B4J279 112 aa14.13□□□□□ -0.15
VPS53-216ENST00000574029 CTXND1A0A1B0GTU2 59 aa14.13□□□□□ -0.15
VPS53-216ENST00000574029 PGPA6NDG6 321 aa14.13□□□□□ -0.15
VPS53-216ENST00000574029 C1QBP02746 253 aa14.13□□□□□ -0.15
VPS53-216ENST00000574029 TYMSP04818 313 aa14.13□□□□□ -0.15
VPS53-216ENST00000574029 SEC11BP0C7V7 166 aa14.13□□□□□ -0.15
VPS53-216ENST00000574029 LINC01556Q5JQF7 62 aa14.13□□□□□ -0.15
VPS53-216ENST00000574029 NHLRC2Q8NBF2 726 aa14.13□□□□□ -0.15
VPS53-216ENST00000574029 CMTM2Q8TAZ6 248 aa14.13□□□□□ -0.15
VPS53-216ENST00000574029 NTN5Q8WTR8 489 aaPredicted RBP14.13□□□□□ -0.15
VPS53-216ENST00000574029 DMBT1Q9UGM3 2413 aaPredicted RBP14.12□□□□□ -0.15
VPS53-216ENST00000574029 IGLV5-52A0A0A0MRZ9 124 aa14.12□□□□□ -0.15
VPS53-216ENST00000574029 IBA57-AS1B1ANH7 110 aa14.12□□□□□ -0.15
VPS53-216ENST00000574029 EIF5AP63241 154 aaKnown RBP14.12□□□□□ -0.15
VPS53-216ENST00000574029 TVP23CQ96ET8 276 aa14.12□□□□□ -0.15
VPS53-216ENST00000574029 TMEM70Q9BUB7 260 aa14.12□□□□□ -0.15
VPS53-216ENST00000574029 TMEM167BQ9NRX6 74 aa14.12□□□□□ -0.15
VPS53-216ENST00000574029 RPH3ALQ9UNE2 315 aa14.12□□□□□ -0.15
VPS53-216ENST00000574029 FAM229AH3BQW9 127 aa14.11□□□□□ -0.15
VPS53-216ENST00000574029 PSCAO43653 123 aa14.11□□□□□ -0.15
VPS53-216ENST00000574029 PPT1P50897 306 aa14.11□□□□□ -0.15
VPS53-216ENST00000574029 LGALSLQ3ZCW2 172 aaPredicted RBP14.11□□□□□ -0.15
VPS53-216ENST00000574029 GOLT1AQ6ZVE7 132 aa14.11□□□□□ -0.15
VPS53-216ENST00000574029 ZNF471Q9BX82 626 aaPredicted RBP14.11□□□□□ -0.15
VPS53-216ENST00000574029 SDF2L1Q9HCN8 221 aa14.11□□□□□ -0.15
VPS53-216ENST00000574029 VPS13BQ7Z7G8 4022 aa14.1□□□□□ -0.15
VPS53-216ENST00000574029 hCG_2014768A0A024R1R8 64 aa14.1□□□□□ -0.15
VPS53-216ENST00000574029 F6UZH7 168 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms