RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PSMG4Q5JS54 123 aa17.26■□□□□ 0.35
VPS53-211ENST00000571805 Q6ZS46 218 aa17.26■□□□□ 0.35
VPS53-211ENST00000571805 FOXC2Q99958 501 aa17.26■□□□□ 0.35
VPS53-211ENST00000571805 IGKV2D-26A0A0A0MRZ7 120 aa17.26■□□□□ 0.35
VPS53-211ENST00000571805 NDUFS8O00217 210 aa17.26■□□□□ 0.35
VPS53-211ENST00000571805 CBY1Q9Y3M2 126 aa17.26■□□□□ 0.35
VPS53-211ENST00000571805 ATP5LO75964 103 aa17.25■□□□□ 0.35
VPS53-211ENST00000571805 FAM19A4Q96LR4 140 aa17.25■□□□□ 0.35
VPS53-211ENST00000571805 IGHV4-30-2A0A087WSY4 118 aa17.25■□□□□ 0.35
VPS53-211ENST00000571805 IGKCP01834 107 aa17.25■□□□□ 0.35
VPS53-211ENST00000571805 MRAP2Q96G30 205 aa17.25■□□□□ 0.35
VPS53-211ENST00000571805 SMPXQ9UHP9 88 aa17.25■□□□□ 0.35
VPS53-211ENST00000571805 TRAV21A0A0B4J279 112 aa17.24■□□□□ 0.35
VPS53-211ENST00000571805 PF4V1P10720 104 aa17.24■□□□□ 0.35
VPS53-211ENST00000571805 A6NDN8 102 aa17.23■□□□□ 0.35
VPS53-211ENST00000571805 H3BRM9 83 aa17.23■□□□□ 0.35
VPS53-211ENST00000571805 IGLV1-40P01703 118 aa17.23■□□□□ 0.35
VPS53-211ENST00000571805 CLEC2AQ6UVW9 174 aa17.23■□□□□ 0.35
VPS53-211ENST00000571805 LCNL1Q6ZST4 164 aa17.23■□□□□ 0.35
VPS53-211ENST00000571805 SRSF1Q07955 248 aaKnown RBP eCLIP17.23■□□□□ 0.357e-9■■□□□ 13.7
VPS53-211ENST00000571805 SPRY2O43597 315 aa17.22■□□□□ 0.35
VPS53-211ENST00000571805 DPM2O94777 84 aa17.22■□□□□ 0.35
VPS53-211ENST00000571805 RBX1P62877 108 aa17.22■□□□□ 0.35
VPS53-211ENST00000571805 COL12A1Q99715 3063 aa17.22■□□□□ 0.35
VPS53-211ENST00000571805 TMEM8BA6NDV4 472 aa17.22■□□□□ 0.35
VPS53-211ENST00000571805 F6UB75 175 aa17.22■□□□□ 0.35
VPS53-211ENST00000571805 ATP5J2P56134 94 aa17.22■□□□□ 0.35
VPS53-211ENST00000571805 APRG1Q8IVJ8 170 aa17.22■□□□□ 0.35
VPS53-211ENST00000571805 MYOZ3Q8TDC0 251 aa17.22■□□□□ 0.35
VPS53-211ENST00000571805 MSMBP08118 114 aa17.21■□□□□ 0.35
VPS53-211ENST00000571805 RPL11P62913 178 aaKnown RBP17.21■□□□□ 0.35
VPS53-211ENST00000571805 ANXA2RQ3ZCQ2 193 aa17.21■□□□□ 0.35
VPS53-211ENST00000571805 RHPN1-AS1Q9BWJ2 59 aa17.21■□□□□ 0.35
VPS53-211ENST00000571805 TM4SF20Q53R12 229 aa17.21■□□□□ 0.34
VPS53-211ENST00000571805 TTTY13Q9BZ97 58 aa17.21■□□□□ 0.34
VPS53-211ENST00000571805 CFAP46Q8IYW2 2715 aa17.2■□□□□ 0.34
VPS53-211ENST00000571805 C9orf118A6NHY6 69 aa17.2■□□□□ 0.34
VPS53-211ENST00000571805 M0R381 172 aa17.2■□□□□ 0.34
VPS53-211ENST00000571805 KIR3DS1Q14943 382 aa17.2■□□□□ 0.34
VPS53-211ENST00000571805 SMIM2Q9BVW6 85 aa17.2■□□□□ 0.34
VPS53-211ENST00000571805 PKD1L2Q7Z442 2459 aa17.2■□□□□ 0.34
VPS53-211ENST00000571805 ASIPP42127 132 aa17.2■□□□□ 0.34
VPS53-211ENST00000571805 GTSCR1Q86UQ5 136 aa17.2■□□□□ 0.34
VPS53-211ENST00000571805 MRPL35Q9NZE8 188 aaKnown RBP17.2■□□□□ 0.34
VPS53-211ENST00000571805 RNASE4P34096 147 aaKnown RBP17.19■□□□□ 0.34
VPS53-211ENST00000571805 CFHR3Q02985 330 aa17.19■□□□□ 0.34
VPS53-211ENST00000571805 ZC2HC1BQ5TFG8 222 aa17.19■□□□□ 0.34
VPS53-211ENST00000571805 RASL10AQ92737 203 aa17.19■□□□□ 0.34
VPS53-211ENST00000571805 HIGD1BQ9P298 99 aa17.19■□□□□ 0.34
VPS53-211ENST00000571805 MAP1AP78559 2803 aaPredicted RBP17.19■□□□□ 0.34
VPS53-211ENST00000571805 A0A0G2JLM5 398 aa17.18■□□□□ 0.34
VPS53-211ENST00000571805 AVPP01185 164 aa17.18■□□□□ 0.34
VPS53-211ENST00000571805 S100A4P26447 101 aaKnown RBP17.18■□□□□ 0.34
VPS53-211ENST00000571805 CELSR2Q9HCU4 2923 aa17.18■□□□□ 0.34
VPS53-211ENST00000571805 IGKV3-7A0A075B6H7 116 aa17.18■□□□□ 0.34
VPS53-211ENST00000571805 MED14OSP0DP75 135 aa17.18■□□□□ 0.34
VPS53-211ENST00000571805 A0A087WX48 190 aa17.17■□□□□ 0.34
VPS53-211ENST00000571805 TRBV7-9A0A0J9YWB2 115 aa17.17■□□□□ 0.34
VPS53-211ENST00000571805 DPH3P1Q9H4G8 78 aa17.17■□□□□ 0.34
VPS53-211ENST00000571805 TMEM160Q9NX00 188 aa17.17■□□□□ 0.34
VPS53-211ENST00000571805 GNRH2O43555 120 aa17.17■□□□□ 0.34
VPS53-211ENST00000571805 C14orf178Q8N769 122 aaPredicted RBP17.17■□□□□ 0.34
VPS53-211ENST00000571805 JMJD8Q96S16 334 aa17.17■□□□□ 0.34
VPS53-211ENST00000571805 SPOCK3Q9BQ16 436 aa17.17■□□□□ 0.34
VPS53-211ENST00000571805 DAZ1Q9NQZ3 744 aaKnown RBP17.17■□□□□ 0.34
VPS53-211ENST00000571805 PHLDA3Q9Y5J5 127 aa17.17■□□□□ 0.34
VPS53-211ENST00000571805 SELENOKQ9Y6D0 94 aa17.17■□□□□ 0.34
VPS53-211ENST00000571805 RNASE3P12724 160 aaKnown RBP17.16■□□□□ 0.34
VPS53-211ENST00000571805 C20orf78Q9BR46 151 aa17.16■□□□□ 0.34
VPS53-211ENST00000571805 EDN2P20800 178 aa17.15■□□□□ 0.34
VPS53-211ENST00000571805 SUMO2P61956 95 aaKnown RBP17.15■□□□□ 0.34
VPS53-211ENST00000571805 SPG11Q96JI7 2443 aa17.15■□□□□ 0.34
VPS53-211ENST00000571805 HLA-DRB4P13762 266 aa17.15■□□□□ 0.34
VPS53-211ENST00000571805 UFSP1Q6NVU6 142 aa17.15■□□□□ 0.34
VPS53-211ENST00000571805 CST9LQ9H4G1 147 aa17.15■□□□□ 0.34
VPS53-211ENST00000571805 HLA-DRB4X5D2U9 266 aa17.15■□□□□ 0.34
VPS53-211ENST00000571805 RNF223E7ERA6 249 aa17.14■□□□□ 0.33
VPS53-211ENST00000571805 RPL39LQ96EH5 51 aaKnown RBP17.14■□□□□ 0.33
VPS53-211ENST00000571805 TRBV25-1A0A075B6N4 114 aa17.14■□□□□ 0.33
VPS53-211ENST00000571805 GAGE10A6NGK3 116 aa17.14■□□□□ 0.33
VPS53-211ENST00000571805 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP17.14■□□□□ 0.33
VPS53-211ENST00000571805 H3BUT2 72 aa17.14■□□□□ 0.33
VPS53-211ENST00000571805 GAGE12BA1L429 117 aa17.13■□□□□ 0.33
VPS53-211ENST00000571805 SRD5A1P18405 259 aa17.13■□□□□ 0.33
VPS53-211ENST00000571805 ORMDL2Q53FV1 153 aa17.13■□□□□ 0.33
VPS53-211ENST00000571805 AP1S3Q96PC3 154 aa17.13■□□□□ 0.33
VPS53-211ENST00000571805 CHAC1Q9BUX1 264 aa17.13■□□□□ 0.33
VPS53-211ENST00000571805 FLNCQ14315 2725 aa17.13■□□□□ 0.33
VPS53-211ENST00000571805 K7EMT4 169 aa17.13■□□□□ 0.33
VPS53-211ENST00000571805 CDKN1BP46527 198 aa17.13■□□□□ 0.33
VPS53-211ENST00000571805 TOMM6Q96B49 74 aa17.13■□□□□ 0.33
VPS53-211ENST00000571805 TRAV12-1A0A0B4J245 112 aa17.12■□□□□ 0.33
VPS53-211ENST00000571805 B4DSR2 109 aa17.12■□□□□ 0.33
VPS53-211ENST00000571805 NAA38Q9BRA0 125 aaKnown RBP17.12■□□□□ 0.33
VPS53-211ENST00000571805 RAB37Q96AX2 223 aa17.11■□□□□ 0.33
VPS53-211ENST00000571805 MUC4Q99102 2169 aa17.11■□□□□ 0.33
VPS53-211ENST00000571805 KLLNB2CW77 178 aa17.11■□□□□ 0.33
VPS53-211ENST00000571805 TMEM95Q3KNT9 176 aa17.11■□□□□ 0.33
VPS53-211ENST00000571805 ZNF580Q9UK33 172 aa17.11■□□□□ 0.33
VPS53-211ENST00000571805 K7EMI3 77 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms