RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 GAGE4Q13068 117 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 GAGE5Q13069 117 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 ZNF876PQ49A33 203 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 GAGE13Q4V321 117 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 C14orf177Q52M58 125 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 UBE2WQ96B02 151 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 C2orf50Q96LR7 162 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 ATP5SQ99766 215 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 SLC25A2Q9BXI2 301 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 OR51M1Q9H341 326 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 UQCC1Q9NVA1 299 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 WDR83OSQ9Y284 106 aa10.42□□□□□ -0.74
CLK3-223ENST00000568488 CIDEAO60543 219 aa10.41□□□□□ -0.74
CLK3-223ENST00000568488 TYMSP04818 313 aa10.41□□□□□ -0.74
CLK3-223ENST00000568488 SPCS2Q15005 226 aa10.41□□□□□ -0.74
CLK3-223ENST00000568488 GCSAMLQ5JQS6 135 aa10.41□□□□□ -0.74
CLK3-223ENST00000568488 DPPA3Q6W0C5 159 aa10.41□□□□□ -0.74
CLK3-223ENST00000568488 UBE2L5PA0A1B0GUS4 154 aa10.4□□□□□ -0.74
CLK3-223ENST00000568488 SEC11BP0C7V7 166 aa10.4□□□□□ -0.74
CLK3-223ENST00000568488 HSD17B11Q8NBQ5 300 aa10.4□□□□□ -0.74
CLK3-223ENST00000568488 SDF2L1Q9HCN8 221 aa10.4□□□□□ -0.74
CLK3-223ENST00000568488 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.4□□□□□ -0.74
CLK3-223ENST00000568488 RBAKDNA6NC62 111 aa10.39□□□□□ -0.75
CLK3-223ENST00000568488 MBPP02686 304 aaPredicted RBP10.39□□□□□ -0.75
CLK3-223ENST00000568488 MGST1P10620 155 aaKnown RBP10.39□□□□□ -0.75
CLK3-223ENST00000568488 RANP62826 216 aaKnown RBP10.39□□□□□ -0.75
CLK3-223ENST00000568488 MIR17HGQ75NE6 70 aa10.39□□□□□ -0.75
CLK3-223ENST00000568488 PHYHIPLQ96FC7 376 aa10.39□□□□□ -0.75
CLK3-223ENST00000568488 LENEPQ9Y5L5 61 aa10.39□□□□□ -0.75
CLK3-223ENST00000568488 TRAV21A0A0B4J279 112 aa10.38□□□□□ -0.75
CLK3-223ENST00000568488 FGF7P21781 194 aa10.38□□□□□ -0.75
CLK3-223ENST00000568488 INPP1P49441 399 aa10.38□□□□□ -0.75
CLK3-223ENST00000568488 PYDC2Q56P42 97 aa10.38□□□□□ -0.75
CLK3-223ENST00000568488 FAM167A-AS1Q96KT0 104 aa10.38□□□□□ -0.75
CLK3-223ENST00000568488 KRTAP9-2Q9BYQ4 174 aa10.38□□□□□ -0.75
CLK3-223ENST00000568488 LSM5Q9Y4Y9 91 aaKnown RBP10.38□□□□□ -0.75
CLK3-223ENST00000568488 A0A087WWC5 75 aa10.37□□□□□ -0.75
CLK3-223ENST00000568488 FAM24AA6NFZ4 105 aa10.37□□□□□ -0.75
CLK3-223ENST00000568488 DIRC3C9JPN6 131 aa10.37□□□□□ -0.75
CLK3-223ENST00000568488 PANO1I0J062 215 aa10.37□□□□□ -0.75
CLK3-223ENST00000568488 NIT1Q86X76 327 aa10.37□□□□□ -0.75
CLK3-223ENST00000568488 CYB561D1Q8N8Q1 229 aa10.37□□□□□ -0.75
CLK3-223ENST00000568488 ASB13Q8WXK3 278 aa10.37□□□□□ -0.75
CLK3-223ENST00000568488 TRIM63Q969Q1 353 aa10.37□□□□□ -0.75
CLK3-223ENST00000568488 KCNS1Q96KK3 526 aa10.37□□□□□ -0.75
CLK3-223ENST00000568488 FXYD5Q96DB9 178 aa10.36□□□□□ -0.75
CLK3-223ENST00000568488 DPH3Q96FX2 82 aa10.36□□□□□ -0.75
CLK3-223ENST00000568488 ZC2HC1AQ96GY0 325 aa10.36□□□□□ -0.75
CLK3-223ENST00000568488 A0A087WX48 190 aa10.35□□□□□ -0.75
CLK3-223ENST00000568488 F6UZH7 168 aa10.35□□□□□ -0.75
CLK3-223ENST00000568488 ELOBQ15370 118 aa10.35□□□□□ -0.75
CLK3-223ENST00000568488 KCNIP4Q6PIL6 250 aa10.35□□□□□ -0.75
CLK3-223ENST00000568488 OR2T35Q8NGX2 323 aa10.35□□□□□ -0.75
CLK3-223ENST00000568488 HYLS1Q96M11 299 aa10.35□□□□□ -0.75
CLK3-223ENST00000568488 C1orf43Q9BWL3 253 aa10.35□□□□□ -0.75
CLK3-223ENST00000568488 FLVCR2Q9UPI3 526 aa10.35□□□□□ -0.75
CLK3-223ENST00000568488 PGPEP1LA6NFU8 196 aa10.34□□□□□ -0.75
CLK3-223ENST00000568488 C9orf163Q8N9P6 203 aa10.34□□□□□ -0.75
CLK3-223ENST00000568488 CHAC2Q8WUX2 184 aa10.34□□□□□ -0.75
CLK3-223ENST00000568488 SAMD10Q9BYL1 202 aa10.34□□□□□ -0.75
CLK3-223ENST00000568488 Q9UF83 564 aa10.34□□□□□ -0.75
CLK3-223ENST00000568488 LPAP08519 4548 aa10.34□□□□□ -0.75
CLK3-223ENST00000568488 USP17L23D6RBM5 183 aa10.33□□□□□ -0.76
CLK3-223ENST00000568488 S100A11P31949 105 aa10.33□□□□□ -0.76
CLK3-223ENST00000568488 Q0VG73 95 aa10.33□□□□□ -0.76
CLK3-223ENST00000568488 ZNF506Q5JVG8 444 aa10.33□□□□□ -0.76
CLK3-223ENST00000568488 DGAT2L7PQ6IED9 249 aa10.33□□□□□ -0.76
CLK3-223ENST00000568488 ATRAIDQ6UW56 229 aa10.33□□□□□ -0.76
CLK3-223ENST00000568488 LINC01600Q96MT4 127 aa10.33□□□□□ -0.76
CLK3-223ENST00000568488 OR7C2O60412 319 aa10.32□□□□□ -0.76
CLK3-223ENST00000568488 PRSS1P07477 247 aa10.32□□□□□ -0.76
CLK3-223ENST00000568488 LINC00694P0DN24 101 aa10.32□□□□□ -0.76
CLK3-223ENST00000568488 OR10G9Q8NGN4 311 aa10.32□□□□□ -0.76
CLK3-223ENST00000568488 TMED6Q8WW62 240 aa10.32□□□□□ -0.76
CLK3-223ENST00000568488 NMES1Q9C002 83 aa10.32□□□□□ -0.76
CLK3-223ENST00000568488 TREM1Q9NP99 234 aa10.32□□□□□ -0.76
CLK3-223ENST00000568488 PGPA6NDG6 321 aa10.31□□□□□ -0.76
CLK3-223ENST00000568488 FAM25EA8MYX2 175 aa10.31□□□□□ -0.76
CLK3-223ENST00000568488 CCSO14618 274 aa10.31□□□□□ -0.76
CLK3-223ENST00000568488 HLA-DQA1P01909 254 aa10.31□□□□□ -0.76
CLK3-223ENST00000568488 SULT1A1P50225 295 aa10.31□□□□□ -0.76
CLK3-223ENST00000568488 FGF8P55075 233 aaPredicted RBP10.31□□□□□ -0.76
CLK3-223ENST00000568488 SPANXN2Q5MJ10 180 aa10.31□□□□□ -0.76
CLK3-223ENST00000568488 NPCDR1Q9BY65 106 aa10.31□□□□□ -0.76
CLK3-223ENST00000568488 TMEM262E9PQX1 116 aa10.3□□□□□ -0.76
CLK3-223ENST00000568488 HBG1P69891 147 aa10.3□□□□□ -0.76
CLK3-223ENST00000568488 HBG2P69892 147 aa10.3□□□□□ -0.76
CLK3-223ENST00000568488 DMRTA1Q5VZB9 504 aa10.3□□□□□ -0.76
CLK3-223ENST00000568488 SDIM1Q6ZPB5 146 aa10.3□□□□□ -0.76
CLK3-223ENST00000568488 DEDD2Q8WXF8 326 aa10.3□□□□□ -0.76
CLK3-223ENST00000568488 TVP23CQ96ET8 276 aa10.3□□□□□ -0.76
CLK3-223ENST00000568488 BCL7BQ9BQE9 202 aa10.3□□□□□ -0.76
CLK3-223ENST00000568488 PARLQ9H300 379 aa10.3□□□□□ -0.76
CLK3-223ENST00000568488 IGSF23A1L1A6 192 aa10.29□□□□□ -0.76
CLK3-223ENST00000568488 NDUFB6O95139 128 aa10.29□□□□□ -0.76
CLK3-223ENST00000568488 CRPP02741 224 aa10.29□□□□□ -0.76
CLK3-223ENST00000568488 PVALBP20472 110 aaPredicted RBP10.29□□□□□ -0.76
CLK3-223ENST00000568488 UBE2L3P68036 154 aaKnown RBP10.29□□□□□ -0.76
CLK3-223ENST00000568488 ATP6V1FQ16864 119 aa10.29□□□□□ -0.76
CLK3-223ENST00000568488 STX12Q86Y82 276 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms