RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PPBPP02775 128 aa15.27■□□□□ 0.03
CLN3-230ENST00000568076 FXYD7P58549 80 aa15.27■□□□□ 0.03
CLN3-230ENST00000568076 IGHV4-4A0A075B6R2 117 aa15.26■□□□□ 0.03
CLN3-230ENST00000568076 TRAV21A0A0B4J279 112 aa15.26■□□□□ 0.03
CLN3-230ENST00000568076 H0Y8G0 127 aa15.26■□□□□ 0.03
CLN3-230ENST00000568076 ELANEP08246 267 aa15.26■□□□□ 0.03
CLN3-230ENST00000568076 GATA1P15976 413 aaPredicted RBP15.26■□□□□ 0.03
CLN3-230ENST00000568076 APRG1Q8IVJ8 170 aa15.26■□□□□ 0.03
CLN3-230ENST00000568076 C20orf202A1L168 122 aa15.25■□□□□ 0.03
CLN3-230ENST00000568076 LGALS1P09382 135 aaKnown RBP15.25■□□□□ 0.03
CLN3-230ENST00000568076 MRPL52Q86TS9 123 aaKnown RBP15.25■□□□□ 0.03
CLN3-230ENST00000568076 WFDC3Q8IUB2 231 aa15.25■□□□□ 0.03
CLN3-230ENST00000568076 ZNF469Q96JG9 3925 aaPredicted RBP15.25■□□□□ 0.03
CLN3-230ENST00000568076 NBPF19A0A087WUL8 3843 aa15.25■□□□□ 0.03
CLN3-230ENST00000568076 LINC01545Q5VT33 79 aa15.25■□□□□ 0.03
CLN3-230ENST00000568076 DUX5Q96PT3 197 aa15.25■□□□□ 0.03
CLN3-230ENST00000568076 CREBBPQ92793 2442 aa15.25■□□□□ 0.03
CLN3-230ENST00000568076 IGHV4OR15-8A0A075B7B6 117 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 A0A087WW49 117 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 TNFRSF6BO95407 300 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 RNASE4P34096 147 aaKnown RBP15.24■□□□□ 0.03
CLN3-230ENST00000568076 Q6ZN92 141 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 hDV102S1A0JD36 115 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 SPANXN1Q5VSR9 72 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 PMCHL2Q9BQD1 86 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 MS4A6AQ9H2W1 248 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 MAP1LC3AQ9H492 121 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 LAMTOR2Q9Y2Q5 125 aa15.24■□□□□ 0.03
CLN3-230ENST00000568076 DOPEY2Q9Y3R5 2298 aa15.23■□□□□ 0.03
CLN3-230ENST00000568076 TRBV7-9A0A0J9YWB2 115 aa15.23■□□□□ 0.03
CLN3-230ENST00000568076 SYNJ2BPP57105 145 aa15.23■□□□□ 0.03
CLN3-230ENST00000568076 CACNG7P62955 275 aa15.23■□□□□ 0.03
CLN3-230ENST00000568076 ANXA2RQ3ZCQ2 193 aa15.23■□□□□ 0.03
CLN3-230ENST00000568076 TENM4Q6N022 2769 aa15.23■□□□□ 0.03
CLN3-230ENST00000568076 LINC01546A6NGU7 62 aa15.22■□□□□ 0.03
CLN3-230ENST00000568076 SPRY2O43597 315 aa15.22■□□□□ 0.03
CLN3-230ENST00000568076 ID1P41134 155 aa15.22■□□□□ 0.03
CLN3-230ENST00000568076 RNF152Q8N8N0 203 aa15.22■□□□□ 0.03
CLN3-230ENST00000568076 UBE2E2Q96LR5 201 aa15.22■□□□□ 0.03
CLN3-230ENST00000568076 HBDP02042 147 aa15.22■□□□□ 0.03
CLN3-230ENST00000568076 NUTF2P61970 127 aaKnown RBP15.22■□□□□ 0.03
CLN3-230ENST00000568076 HIST2H2BCQ6DN03 193 aa15.22■□□□□ 0.03
CLN3-230ENST00000568076 TFPI2P48307 235 aa15.21■□□□□ 0.03
CLN3-230ENST00000568076 TRAV26-2A0A0B4J265 109 aa15.2■□□□□ 0.02
CLN3-230ENST00000568076 HOXD3P31249 432 aaPredicted RBP15.2■□□□□ 0.02
CLN3-230ENST00000568076 HNRNPA3P51991 378 aaKnown RBP15.2■□□□□ 0.02
CLN3-230ENST00000568076 Q8N2B8 174 aa15.2■□□□□ 0.02
CLN3-230ENST00000568076 KLLNB2CW77 178 aa15.2■□□□□ 0.02
CLN3-230ENST00000568076 LGALS9O00182 355 aa15.2■□□□□ 0.02
CLN3-230ENST00000568076 TSPOP30536 169 aa15.2■□□□□ 0.02
CLN3-230ENST00000568076 SAMD13Q5VXD3 122 aa15.2■□□□□ 0.02
CLN3-230ENST00000568076 SMIM15Q7Z3B0 74 aa15.2■□□□□ 0.02
CLN3-230ENST00000568076 WFDC11Q8NEX6 87 aa15.2■□□□□ 0.02
CLN3-230ENST00000568076 TP73-AS1Q9UF72 201 aa15.2■□□□□ 0.02
CLN3-230ENST00000568076 GNRH2O43555 120 aa15.19■□□□□ 0.02
CLN3-230ENST00000568076 ZNF688P0C7X2 276 aa15.19■□□□□ 0.02
CLN3-230ENST00000568076 ASIPP42127 132 aa15.19■□□□□ 0.02
CLN3-230ENST00000568076 C18orf65Q6ZTR6 163 aa15.19■□□□□ 0.02
CLN3-230ENST00000568076 NRACQ8N912 160 aa15.19■□□□□ 0.02
CLN3-230ENST00000568076 OR2K2Q8NGT1 345 aa15.19■□□□□ 0.02
CLN3-230ENST00000568076 WFDC12Q8WWY7 111 aa15.19■□□□□ 0.02
CLN3-230ENST00000568076 ST20Q9HBF5 79 aa15.19■□□□□ 0.02
CLN3-230ENST00000568076 SCRT2Q9NQ03 307 aa15.18■□□□□ 0.02
CLN3-230ENST00000568076 IGLV2-18A0A075B6J9 118 aa15.18■□□□□ 0.02
CLN3-230ENST00000568076 K7EQG2 157 aa15.18■□□□□ 0.02
CLN3-230ENST00000568076 M0R381 172 aa15.18■□□□□ 0.02
CLN3-230ENST00000568076 S100A4P26447 101 aaKnown RBP15.18■□□□□ 0.02
CLN3-230ENST00000568076 BATFQ16520 125 aa15.18■□□□□ 0.02
CLN3-230ENST00000568076 PSMG4Q5JS54 123 aa15.18■□□□□ 0.02
CLN3-230ENST00000568076 NXT2Q9NPJ8 142 aaKnown RBP15.18■□□□□ 0.02
CLN3-230ENST00000568076 RNASE3P12724 160 aaKnown RBP15.17■□□□□ 0.02
CLN3-230ENST00000568076 ZMAT5Q9UDW3 170 aaKnown RBP15.16■□□□□ 0.02
CLN3-230ENST00000568076 ITPR3Q14573 2671 aa15.16■□□□□ 0.02
CLN3-230ENST00000568076 MED14OSP0DP75 135 aa15.16■□□□□ 0.02
CLN3-230ENST00000568076 ADAMTSL5Q6ZMM2 481 aa15.16■□□□□ 0.02
CLN3-230ENST00000568076 PRSS47A8MTI9 375 aa15.15■□□□□ 0.02
CLN3-230ENST00000568076 DEFB136Q30KP8 78 aa15.15■□□□□ 0.02
CLN3-230ENST00000568076 LINC00469Q8N7U9 141 aa15.15■□□□□ 0.02
CLN3-230ENST00000568076 Q8N8P6 123 aa15.15■□□□□ 0.02
CLN3-230ENST00000568076 IFI27L1Q96BM0 104 aa15.15■□□□□ 0.02
CLN3-230ENST00000568076 MRPS16Q9Y3D3 137 aaKnown RBP15.15■□□□□ 0.02
CLN3-230ENST00000568076 LEPP41159 167 aa15.15■□□□□ 0.02
CLN3-230ENST00000568076 PHLDA3Q9Y5J5 127 aa15.15■□□□□ 0.02
CLN3-230ENST00000568076 CHD6Q8TD26 2715 aa15.14■□□□□ 0.01
CLN3-230ENST00000568076 A0A0J9YX75 114 aa15.14■□□□□ 0.01
CLN3-230ENST00000568076 HSBP1L1C9JCN9 74 aa15.14■□□□□ 0.01
CLN3-230ENST00000568076 FCER1GP30273 86 aa15.14■□□□□ 0.01
CLN3-230ENST00000568076 LGALS9BQ3B8N2 356 aa15.14■□□□□ 0.01
CLN3-230ENST00000568076 LGALS9CQ6DKI2 356 aa15.14■□□□□ 0.01
CLN3-230ENST00000568076 DEFB125Q8N687 156 aa15.14■□□□□ 0.01
CLN3-230ENST00000568076 SLURP1P55000 103 aa15.13■□□□□ 0.01
CLN3-230ENST00000568076 SNRPD3P62318 126 aaKnown RBP15.13■□□□□ 0.01
CLN3-230ENST00000568076 TCTEX1D4Q5JR98 221 aa15.13■□□□□ 0.01
CLN3-230ENST00000568076 MRAP2Q96G30 205 aa15.13■□□□□ 0.01
CLN3-230ENST00000568076 GOLT1BQ9Y3E0 138 aa15.13■□□□□ 0.01
CLN3-230ENST00000568076 C14orf178Q8N769 122 aaPredicted RBP15.12■□□□□ 0.01
CLN3-230ENST00000568076 C18orf15Q96N68 181 aa15.12■□□□□ 0.01
CLN3-230ENST00000568076 TRAV12-3A0A0B4J271 114 aa15.11■□□□□ 0.01
CLN3-230ENST00000568076 DPH3P1Q9H4G8 78 aa15.11■□□□□ 0.01
CLN3-230ENST00000568076 IGKV3-20P01619 116 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms