RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 TMEM242Q9NWH2 141 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 ZNF586Q9NXT0 402 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 MLXQ9UH92 298 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 ZFP30Q9Y2G7 519 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 ARHGAP32A7KAX9 2087 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 A0A087WW49 117 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 A0A087WWC5 75 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 PEX7O00628 323 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 ISLRO14498 428 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 OVOL1O14753 267 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 MRPS12O15235 138 aaKnown RBP3.83□□□□□ -1.8
LDLR-209ENST00000558528 TCRAP04437 139 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 CBLN1P23435 193 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 ATP5G3P48201 142 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 GNG4P50150 75 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 SYNJ2BPP57105 145 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 SNRPD3P62318 126 aaKnown RBP3.83□□□□□ -1.8
LDLR-209ENST00000558528 TMEM183BQ1AE95 376 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 MUC21Q5SSG8 566 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 LEMD1Q68G75 181 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 BAGE2Q86Y30 109 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 TMEM75Q8N9X5 138 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 LINC00477Q96M19 166 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 OR5B12Q96R08 314 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 MCRIP2Q9BUT9 160 aaKnown RBP3.83□□□□□ -1.8
LDLR-209ENST00000558528 TUBA4BQ9H853 241 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 SDF2L1Q9HCN8 221 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 ZNF331Q9NQX6 463 aaPredicted RBP3.83□□□□□ -1.8
LDLR-209ENST00000558528 SMCO4Q9NRQ5 59 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 KLF12Q9Y4X4 402 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 YTHDF2Q9Y5A9 579 aaKnown RBP3.83□□□□□ -1.8
LDLR-209ENST00000558528 LENEPQ9Y5L5 61 aa3.83□□□□□ -1.8
LDLR-209ENST00000558528 C2orf70A6NJV1 201 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 GGTLC3B5MD39 225 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 C9JQL5 133 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 EIF3GO75821 320 aaKnown RBP eCLIP3.82□□□□□ -1.8
LDLR-209ENST00000558528 DUSP14O95147 198 aaKnown RBP3.82□□□□□ -1.8
LDLR-209ENST00000558528 TRBV12-3P01733 135 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 CD28P10747 220 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 FOLR2P14207 255 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 S100PP25815 95 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 RPL35P42766 123 aaKnown RBP3.82□□□□□ -1.8
LDLR-209ENST00000558528 INSL3P51460 131 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 PSG3Q16557 428 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 TCTEX1D4Q5JR98 221 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 LCN12Q6JVE5 192 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 C10orf99Q6UWK7 81 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 UNQ9165/PRO28630Q6UXU0 137 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 ADAMTSL5Q6ZMM2 481 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 TCF24Q7RTU0 167 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 APRG1Q8IVJ8 170 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 LINC01561Q8N1V8 128 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 OR10J6PQ8NGY7 276 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 DYNLRB2Q8TF09 96 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 IMMP2LQ96T52 175 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 RPS10P5Q9NQ39 176 aa3.82□□□□□ -1.8
LDLR-209ENST00000558528 TMEM213A2RRL7 107 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 C7orf77A4D0Y5 90 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 OR4C46A6NHA9 309 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 SMIM1B2RUZ4 78 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 ZNF207O43670 478 aaKnown RBP3.81□□□□□ -1.8
LDLR-209ENST00000558528 NXPH4O95158 308 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 GCGP01275 180 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 CT45A10P0DMU9 189 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 RPL23P62829 140 aaKnown RBP3.81□□□□□ -1.8
LDLR-209ENST00000558528 FLI1Q01543 452 aaPredicted RBP3.81□□□□□ -1.8
LDLR-209ENST00000558528 ADIRFQ15847 76 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 TMEM78Q5T7P6 136 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 EBLN2Q6P2I7 272 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 GOLT1AQ6ZVE7 132 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 TMEM183AQ8IXX5 376 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 C9orf85Q96MD7 179 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 OSTCQ9NRP0 149 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 PSG8Q9UQ74 426 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 SMAD5-AS1Q9Y6J3 95 aa3.81□□□□□ -1.8
LDLR-209ENST00000558528 TRAV9-1A0A075B6T8 112 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 IGHV3OR16-13A0A075B7E8 117 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 IGHV3OR16-8A0A075B7F1 116 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 IGHV3-74A0A0B4J1X5 117 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 IGHV3-66A0A0C4DH42 116 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 H7BYZ3 331 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 LTAP01374 205 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 MGST1P10620 155 aaKnown RBP3.8□□□□□ -1.8
LDLR-209ENST00000558528 ADCYAP1P18509 176 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 TSPOP30536 169 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 ZNF138P52744 262 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 ERVFC1-1P60608 527 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 RPS20P60866 119 aaKnown RBP3.8□□□□□ -1.8
LDLR-209ENST00000558528 MRPL23Q16540 153 aaKnown RBP3.8□□□□□ -1.8
LDLR-209ENST00000558528 GUCA2BQ16661 112 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 NSUN5P1Q3KNT7 163 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 COX19Q49B96 90 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 SMUG1Q53HV7 270 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 CENPWQ5EE01 88 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 C9orf47Q6ZRZ4 202 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 FAM231DQ6ZW35 169 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 LINC01551Q86U37 167 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 EXOC3-AS1Q8N2X6 119 aa3.8□□□□□ -1.8
LDLR-209ENST00000558528 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 156.2 ms