RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 MED9Q9NWA0 146 aa11.55□□□□□ -0.56
CHMP1A-209ENST00000550872 KLK5Q9Y337 293 aaPredicted RBP11.55□□□□□ -0.56
CHMP1A-209ENST00000550872 TCL1AP56279 114 aa11.54□□□□□ -0.56
CHMP1A-209ENST00000550872 ZNF415Q09FC8 603 aa11.54□□□□□ -0.56
CHMP1A-209ENST00000550872 COX8CQ7Z4L0 72 aa11.54□□□□□ -0.56
CHMP1A-209ENST00000550872 NHLRC2Q8NBF2 726 aa11.54□□□□□ -0.56
CHMP1A-209ENST00000550872 DERL1Q9BUN8 251 aa11.54□□□□□ -0.56
CHMP1A-209ENST00000550872 C11orf21Q9P2W6 132 aa11.54□□□□□ -0.56
CHMP1A-209ENST00000550872 DEFB131BA0A096LNP1 70 aa11.53□□□□□ -0.56
CHMP1A-209ENST00000550872 ZNF506Q5JVG8 444 aa11.53□□□□□ -0.56
CHMP1A-209ENST00000550872 MDFICQ9P1T7 246 aa11.53□□□□□ -0.56
CHMP1A-209ENST00000550872 GAGE12BA1L429 117 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 GAGE7O76087 117 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 TYMSP04818 313 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 GAGE12FP0CL80 117 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 GAGE12GP0CL81 117 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 GAGE12IP0CL82 117 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 HTN3P15516 51 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 CRIP1P50238 77 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 TOR2AQ5JU69 321 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 FAM162BQ5T6X4 162 aa11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 EIF5A2Q9GZV4 153 aaKnown RBP11.52□□□□□ -0.57
CHMP1A-209ENST00000550872 TRGV1A0A0A0MS02 117 aa11.51□□□□□ -0.57
CHMP1A-209ENST00000550872 IGHV3-16A0A0C4DH30 117 aa11.51□□□□□ -0.57
CHMP1A-209ENST00000550872 RAB19A4D1S5 217 aa11.51□□□□□ -0.57
CHMP1A-209ENST00000550872 SH2D1AO60880 128 aa11.51□□□□□ -0.57
CHMP1A-209ENST00000550872 ORM1P02763 201 aa11.51□□□□□ -0.57
CHMP1A-209ENST00000550872 Q6ZTI0 123 aa11.51□□□□□ -0.57
CHMP1A-209ENST00000550872 FAM210AQ96ND0 272 aa11.51□□□□□ -0.57
CHMP1A-209ENST00000550872 DNAH7Q8WXX0 4024 aa11.51□□□□□ -0.57
CHMP1A-209ENST00000550872 IGLL5B9A064 214 aa11.5□□□□□ -0.57
CHMP1A-209ENST00000550872 SPINK4O60575 86 aa11.5□□□□□ -0.57
CHMP1A-209ENST00000550872 ZNF674Q2M3X9 581 aa11.5□□□□□ -0.57
CHMP1A-209ENST00000550872 CENPWQ5EE01 88 aa11.5□□□□□ -0.57
CHMP1A-209ENST00000550872 LINC00612Q8N6U2 182 aa11.5□□□□□ -0.57
CHMP1A-209ENST00000550872 SPXQ9BT56 116 aa11.5□□□□□ -0.57
CHMP1A-209ENST00000550872 MLST8Q9BVC4 326 aa11.5□□□□□ -0.57
CHMP1A-209ENST00000550872 IGKV3D-20A0A0C4DH25 116 aa11.49□□□□□ -0.57
CHMP1A-209ENST00000550872 M0R036 132 aa11.49□□□□□ -0.57
CHMP1A-209ENST00000550872 ATP5G1P05496 136 aa11.49□□□□□ -0.57
CHMP1A-209ENST00000550872 GNG4P50150 75 aa11.49□□□□□ -0.57
CHMP1A-209ENST00000550872 MRPL16Q9NX20 251 aaKnown RBP11.49□□□□□ -0.57
CHMP1A-209ENST00000550872 TRGV2A0A075B6R0 118 aa11.48□□□□□ -0.57
CHMP1A-209ENST00000550872 B4DEV8 164 aa11.48□□□□□ -0.57
CHMP1A-209ENST00000550872 F5H768 121 aa11.48□□□□□ -0.57
CHMP1A-209ENST00000550872 TMEM250H0YL14 139 aa11.48□□□□□ -0.57
CHMP1A-209ENST00000550872 LGALS9BQ3B8N2 356 aa11.48□□□□□ -0.57
CHMP1A-209ENST00000550872 PRR27Q6MZM9 219 aa11.48□□□□□ -0.57
CHMP1A-209ENST00000550872 MGST1P10620 155 aaKnown RBP11.47□□□□□ -0.57
CHMP1A-209ENST00000550872 S100A4P26447 101 aaKnown RBP11.47□□□□□ -0.57
CHMP1A-209ENST00000550872 CEBPGP53567 150 aa11.47□□□□□ -0.57
CHMP1A-209ENST00000550872 RAB14P61106 215 aa11.47□□□□□ -0.57
CHMP1A-209ENST00000550872 TENM2Q9NT68 2774 aa11.47□□□□□ -0.57
CHMP1A-209ENST00000550872 TMSB15BA0A087X1C1 80 aa11.46□□□□□ -0.57
CHMP1A-209ENST00000550872 KRBOX1C9JBD0 128 aa11.46□□□□□ -0.57
CHMP1A-209ENST00000550872 M0R2P5 195 aa11.46□□□□□ -0.57
CHMP1A-209ENST00000550872 IGLV2-8P01709 118 aa11.46□□□□□ -0.57
CHMP1A-209ENST00000550872 ASIPP42127 132 aa11.46□□□□□ -0.57
CHMP1A-209ENST00000550872 SMIM12Q96EX1 92 aa11.46□□□□□ -0.57
CHMP1A-209ENST00000550872 PARLQ9H300 379 aa11.46□□□□□ -0.57
CHMP1A-209ENST00000550872 TRBV20OR9-2A0A075B6H5 130 aa11.45□□□□□ -0.58
CHMP1A-209ENST00000550872 IGHV4-4A0A075B6R2 117 aa11.45□□□□□ -0.58
CHMP1A-209ENST00000550872 GRIFINA4D1Z8 144 aa11.45□□□□□ -0.58
CHMP1A-209ENST00000550872 PGPEP1LA6NFU8 196 aa11.45□□□□□ -0.58
CHMP1A-209ENST00000550872 NDUFS6O75380 124 aaKnown RBP11.45□□□□□ -0.58
CHMP1A-209ENST00000550872 SRP19P09132 144 aaKnown RBP11.45□□□□□ -0.58
CHMP1A-209ENST00000550872 OR5I1Q13606 314 aa11.45□□□□□ -0.58
CHMP1A-209ENST00000550872 LINC01559Q495D7 138 aa11.45□□□□□ -0.58
CHMP1A-209ENST00000550872 DYNC2H1Q8NCM8 4307 aaKnown RBP11.45□□□□□ -0.58
CHMP1A-209ENST00000550872 MUC4Q99102 2169 aa11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 C9JCJ5 164 aa11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 RNASE3P12724 160 aaKnown RBP11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 TCTAP57738 103 aa11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 RASL10AQ92737 203 aa11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 DAZAP1Q96EP5 407 aaKnown RBP11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 FAM210BQ96KR6 192 aa11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 C9orf85Q96MD7 179 aa11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 C18orf15Q96N68 181 aa11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 BIN3Q9NQY0 253 aa11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 APLNQ9ULZ1 77 aa11.44□□□□□ -0.58
CHMP1A-209ENST00000550872 IGHV3-53P01767 116 aa11.43□□□□□ -0.58
CHMP1A-209ENST00000550872 RPL19P84098 196 aaKnown RBP11.43□□□□□ -0.58
CHMP1A-209ENST00000550872 IFITM2Q01629 132 aa11.43□□□□□ -0.58
CHMP1A-209ENST00000550872 PEA15Q15121 130 aa11.43□□□□□ -0.58
CHMP1A-209ENST00000550872 NDUFAF3Q9BU61 184 aa11.43□□□□□ -0.58
CHMP1A-209ENST00000550872 CSMD3Q7Z407 3707 aa11.43□□□□□ -0.58
CHMP1A-209ENST00000550872 H3BVH4 76 aa11.42□□□□□ -0.58
CHMP1A-209ENST00000550872 ARMS2P0C7Q2 107 aa11.42□□□□□ -0.58
CHMP1A-209ENST00000550872 ZNF876PQ49A33 203 aa11.42□□□□□ -0.58
CHMP1A-209ENST00000550872 DNLZQ5SXM8 178 aa11.42□□□□□ -0.58
CHMP1A-209ENST00000550872 TMEM88Q6PEY1 159 aa11.42□□□□□ -0.58
CHMP1A-209ENST00000550872 OCC1Q8TAD7 63 aa11.42□□□□□ -0.58
CHMP1A-209ENST00000550872 LYSTQ99698 3801 aa11.42□□□□□ -0.58
CHMP1A-209ENST00000550872 HOXA5P20719 270 aa11.41□□□□□ -0.58
CHMP1A-209ENST00000550872 SRSF3P84103 164 aaKnown RBP11.41□□□□□ -0.58
CHMP1A-209ENST00000550872 ZNF575Q86XF7 245 aa11.41□□□□□ -0.58
CHMP1A-209ENST00000550872 SMIM7Q9BQ49 75 aa11.41□□□□□ -0.58
CHMP1A-209ENST00000550872 IL36BQ9NZH7 164 aa11.41□□□□□ -0.58
CHMP1A-209ENST00000550872 C19orf71A6NCJ1 209 aa11.4□□□□□ -0.58
CHMP1A-209ENST00000550872 ZNF727A8MUV8 499 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 278 ms