RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 CASP8AP2Q9UKL3 1982 aa2.19□□□□□ -2.06
USP28-210ENST00000542033 LCTP09848 1927 aa2.19□□□□□ -2.06
USP28-210ENST00000542033 PLXNB3Q9ULL4 1909 aa2.19□□□□□ -2.06
USP28-210ENST00000542033 FANCMQ8IYD8 2048 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 DOCK3Q8IZD9 2030 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 BPTFQ12830 3046 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 IGKV6-21A0A0C4DH24 114 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 UBE2L5PA0A1B0GUS4 154 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 WI2-2373I1.2A0A1W2PRP0 233 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 PLAC8L1A1L4L8 177 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 HMGN4O00479 90 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 CCL22O00626 93 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 PIN1P1O15428 100 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 NDUFB3O43676 98 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 NDUFS5O43920 106 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 NPYP01303 97 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 IL4P05112 153 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 SSR2P43308 183 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 NCBP2P52298 156 aaKnown RBP eCLIP2.18□□□□□ -2.06
USP28-210ENST00000542033 DSCR4P56555 118 aaPredicted RBP2.18□□□□□ -2.06
USP28-210ENST00000542033 UBE2D3P61077 147 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 DAD1P61803 113 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 UBE2D2P62837 147 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 SUPT4H1P63272 117 aaKnown RBP2.18□□□□□ -2.06
USP28-210ENST00000542033 REG3AQ06141 175 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 DEFB121Q5J5C9 76 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 C1orf140Q5VVS0 124 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 LINC00305Q7Z4B0 112 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 ATP5L2Q7Z4Y8 100 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 C5orf38Q86SI9 138 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 LINC00643Q86TS7 51 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 PDPNQ86YL7 162 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 SERP2Q8N6R1 65 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 DCAF4L2Q8NA75 395 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 LY6G5BQ8NDX9 201 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 BRK1Q8WUW1 75 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 ZC2HC1AQ96GY0 325 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 IGF2BP2-AS1Q96M15 143 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 ODF3Q96PU9 254 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 CHAC1Q9BUX1 264 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 C11orf1Q9H5F2 150 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 OSTCQ9NRP0 149 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 F11RQ9Y624 299 aaKnown RBP2.18□□□□□ -2.06
USP28-210ENST00000542033 ANAPC1Q9H1A4 1944 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 PLXNA1Q9UIW2 1896 aa2.18□□□□□ -2.06
USP28-210ENST00000542033 TRAV8-1A0A0A6YYK1 113 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 IGLV1-36A0A0B4J1U3 117 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 MYMXA0A1B0GTQ4 84 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 CTXND1A0A1B0GTU2 59 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 TCRBV4S1A1TA0A5B7 111 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 PGPA6NDG6 321 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 CRYM-AS1A6NIL9 109 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 UPK2O00526 184 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 SYNGR2O43760 224 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 BCE1O60756 84 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 TCL1BO95988 128 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 IGLV3-25P01717 112 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 GCHFRP30047 84 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 HERVK_113P61574 105 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 ERCC8Q13216 396 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 RSPO1Q2MKA7 263 aaPredicted RBP2.17□□□□□ -2.06
USP28-210ENST00000542033 Q6ZQT7 251 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 ZCCHC24Q8N2G6 241 aaKnown RBP2.17□□□□□ -2.06
USP28-210ENST00000542033 FAM19A2Q8N3H0 131 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 SLC22A24Q8N4F4 322 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 LINC01555Q8NAE3 123 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 IFI27L1Q96BM0 104 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 C18orf15Q96N68 181 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 TM2D3Q9BRN9 247 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 UPK3BQ9BT76 320 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 LINC00527Q9UJ94 153 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 HILPDAQ9Y5L2 63 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 PAPPA2Q9BXP8 1791 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 UBR3Q6ZT12 1888 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 VWA8A3KMH1 1905 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 PTPRDP23468 1912 aa2.17□□□□□ -2.06
USP28-210ENST00000542033 IGHV3OR15-7A0A075B7D8 119 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 SMIM27A0A1W2PRY6 76 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 CCL16O15467 120 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 NDUFC1O43677 76 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 PPYP01298 95 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 INSP01308 110 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 TCRAP04437 139 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 IGHV4-34P06331 123 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 PIRTP0C851 137 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 HMGA1P17096 107 aaKnown RBP2.16□□□□□ -2.06
USP28-210ENST00000542033 LGALS3P17931 250 aaKnown RBP2.16□□□□□ -2.06
USP28-210ENST00000542033 CCL1P22362 96 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 ZNF138P52744 262 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 FXYD2P54710 66 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 PRR3P79522 188 aaKnown RBP2.16□□□□□ -2.06
USP28-210ENST00000542033 CST6Q15828 149 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 LYPD2Q6UXB3 125 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 SDIM1Q6ZPB5 146 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 KTN1-AS1Q86SY8 53 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 MARCH3Q86UD3 253 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 OR5C1Q8NGR4 320 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 ZNF799Q96GE5 643 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 DSCR8Q96T75 97 aa2.16□□□□□ -2.06
USP28-210ENST00000542033 DYNLRB1Q9NP97 96 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms