RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 RPS20P60866 119 aaKnown RBP0.6□□□□□ -2.31
PRKDC-210ENST00000541488 RAB4BP61018 213 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 YPEL3P61236 119 aaPredicted RBP0.6□□□□□ -2.31
PRKDC-210ENST00000541488 UBA52P62987 128 aaKnown RBP0.6□□□□□ -2.31
PRKDC-210ENST00000541488 HIST1H3AP68431 136 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 RHOGP84095 191 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 H3F3AP84243 136 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 Q6ZS92 163 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 GRINAQ7Z429 371 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 LINC00311Q8N616 119 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 GDPD1Q8N9F7 314 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 OR5A1Q8NGJ0 315 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 CT55Q8WUE5 264 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 ITFG2Q969R8 447 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 ISOC1Q96CN7 298 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 PARD6GQ9BYG4 376 aaPredicted RBP0.6□□□□□ -2.31
PRKDC-210ENST00000541488 CCDC90BQ9GZT6 254 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 DCSTAMPQ9H295 470 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 RNF122Q9H9V4 155 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.6□□□□□ -2.31
PRKDC-210ENST00000541488 CYSLTR1Q9Y271 337 aa0.6□□□□□ -2.31
PRKDC-210ENST00000541488 hADV38S2A0JD32 116 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 C7orf71A4D174 169 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 C2orf70A6NJV1 201 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 OR2J2O76002 312 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 PROSCO94903 275 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 UBL3O95164 117 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 CNIH1O95406 144 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 CASP1P29466 404 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 CTAG1AP78358 180 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 AESQ08117 197 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 OOSP2Q86WS3 158 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 FAM19A2Q8N3H0 131 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 MNS1Q8NEH6 495 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 ZNF418Q8TF45 676 aaPredicted RBP0.59□□□□□ -2.31
PRKDC-210ENST00000541488 C4orf3Q8WVX3 66 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 KRTAP2-1Q9BYU5 128 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 OSTCQ9NRP0 149 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 KLK9Q9UKQ9 250 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 EPDR1Q9UM22 224 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 SLC35A3Q9Y2D2 325 aa0.59□□□□□ -2.31
PRKDC-210ENST00000541488 A0A087X0T9 212 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 M0R2N4 97 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 SMR3BP02814 79 aaPredicted RBP0.58□□□□□ -2.32
PRKDC-210ENST00000541488 SERPINE1P05121 402 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 RPS17P08708 135 aaKnown RBP0.58□□□□□ -2.32
PRKDC-210ENST00000541488 OR4E1P0C645 316 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 PPIBP23284 216 aaKnown RBP0.58□□□□□ -2.32
PRKDC-210ENST00000541488 HAMPP81172 84 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 LINC01554Q52M75 96 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 TMEM97Q5BJF2 176 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 OR13D1Q8NGV5 346 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 OR10J5Q8NHC4 309 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 SFT2D1Q8WV19 159 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 GPR146Q96CH1 333 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 DDA1Q9BW61 102 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 TCEAL2Q9H3H9 227 aaPredicted RBP0.58□□□□□ -2.32
PRKDC-210ENST00000541488 RASL12Q9NYN1 266 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 C22orf24Q9Y442 160 aa0.58□□□□□ -2.32
PRKDC-210ENST00000541488 TNCP24821 2201 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 MUC5BQ9HC84 5762 aaPredicted RBP0.57□□□□□ -2.32
PRKDC-210ENST00000541488 A0A087WUJ7 227 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 TRBV6-7A0A0A0MS04 114 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 TRAV12-1A0A0B4J245 112 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 TRAV1-1A0A0B4J248 108 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 IGKV1-9A0A0C4DH69 117 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 FAM236DA0A1B0GTK5 79 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 SMIM9A6NGZ8 99 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 ARL5CA6NH57 179 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 SULT1B1O43704 296 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 PDE6DO43924 150 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 LYPLA2O95372 231 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 ZNF682O95780 498 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 TCRBP04435 133 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 C8GP07360 202 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 FAM236CP0DP71 79 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 ANP32AP39687 249 aaKnown RBP0.57□□□□□ -2.32
PRKDC-210ENST00000541488 CDKN2CP42773 168 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 SSR2P43308 183 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 LSM6P62312 80 aaKnown RBP0.57□□□□□ -2.32
PRKDC-210ENST00000541488 RANP62826 216 aaKnown RBP0.57□□□□□ -2.32
PRKDC-210ENST00000541488 ITGB3BPQ13352 177 aaPredicted RBP0.57□□□□□ -2.32
PRKDC-210ENST00000541488 TSNQ15631 228 aaKnown RBP0.57□□□□□ -2.32
PRKDC-210ENST00000541488 C12orf74Q32Q52 190 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 AKIRIN2Q53H80 203 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 C12orf45Q8N5I9 185 aaPredicted RBP0.57□□□□□ -2.32
PRKDC-210ENST00000541488 TEX47Q8TBZ9 253 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 PPP1R14BQ96C90 147 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 OR51V1Q9H2C8 321 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 TVP23BQ9NYZ1 205 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 SLC22A13Q9Y226 551 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 TANC2Q9HCD6 1990 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 MDN1Q9NU22 5596 aa0.57□□□□□ -2.32
PRKDC-210ENST00000541488 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.56□□□□□ -2.32
PRKDC-210ENST00000541488 hCG_1818297A0A087WSY0 165 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 A8MT66 165 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 INE1O15225 51 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 HAND1O96004 215 aa0.56□□□□□ -2.32
PRKDC-210ENST00000541488 MGST1P10620 155 aaKnown RBP0.56□□□□□ -2.32
PRKDC-210ENST00000541488 ZNF93P35789 620 aaPredicted RBP0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms