RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 UBE2E2Q96LR5 201 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 C17orf77Q96MU5 243 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 IGHV3-16A0A0C4DH30 117 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 MSRB2Q9Y3D2 182 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 LTBP4Q8N2S1 1624 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 RP1L1Q8IWN7 2480 aaPredicted RBP6.88□□□□□ -1.31
YBX3-208ENST00000540447 COX7A2LO14548 114 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 RNF114Q9Y508 228 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 POLR2AP24928 1970 aaKnown RBP6.88□□□□□ -1.31
YBX3-208ENST00000540447 PATJQ8NI35 1801 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 A0A1B0GXF2 115 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 CFHR1Q03591 330 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 KMT2EQ8IZD2 1858 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 IGKV1D-17A0A075B6S4 117 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 NSUN5P1Q3KNT7 163 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 TEX36Q5VZQ5 186 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 FOXL2NBQ6ZUU3 175 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 WDR86Q86TI4 376 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 VPREB1P12018 145 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 ZNRF2Q8NHG8 242 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 WT1-ASQ06250 92 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 KLK9Q9UKQ9 250 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 IGHV1-46P01743 117 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 GDF5OSQ5U4N7 250 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 NKAPP1Q8N9T2 125 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 SPRY4Q9C004 299 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 J3QLI3 93 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 RHPN1-AS1Q9BWJ2 59 aa6.87□□□□□ -1.31
YBX3-208ENST00000540447 KLK5Q9Y337 293 aaPredicted RBP6.87□□□□□ -1.31
YBX3-208ENST00000540447 SIPA1L3O60292 1781 aaPredicted RBP6.86□□□□□ -1.31
YBX3-208ENST00000540447 FLVCR1-AS1Q8TAF5 88 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 TRBV30A0A0K0K1B3 111 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 DEFB105AQ8NG35 78 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 IGKV2D-26A0A0A0MRZ7 120 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 IGHV1-18A0A0C4DH31 117 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 PDE6GP18545 87 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 FAM27E3Q08E93 113 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 MAPKAPK5-AS1Q8N8E1 139 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 FAM186AA6NE01 2351 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 TRIAP1O43715 76 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 GAFA1Q96PS6 74 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 BUB1B-PAK6H3BSN5 160 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 BSPH1Q075Z2 132 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 MIAQ16674 131 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 DOCK3Q8IZD9 2030 aa6.86□□□□□ -1.31
YBX3-208ENST00000540447 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.85□□□□□ -1.31
YBX3-208ENST00000540447 IGKV2-29A2NJV5 120 aaPredicted RBP6.85□□□□□ -1.31
YBX3-208ENST00000540447 UBE2BP63146 152 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 RPL39P62891 51 aaKnown RBP6.85□□□□□ -1.31
YBX3-208ENST00000540447 HIGD2BQ4VC39 106 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 C1orf210Q8IVY1 113 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 TIMM17AQ99595 171 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 YLPM1P49750 1951 aaKnown RBP6.85□□□□□ -1.31
YBX3-208ENST00000540447 GATA3P23771 443 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 PIK3CD-AS1Q5SR53 167 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 SOSTDC1Q6X4U4 206 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 ZNRD1Q9P1U0 126 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 UBE2AP49459 152 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 SPINK13Q1W4C9 94 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 PARP14Q460N5 1801 aa6.85□□□□□ -1.31
YBX3-208ENST00000540447 GLI3P10071 1580 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 IGHV3-33P01772 117 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 TRIP6Q15654 476 aaKnown RBP6.84□□□□□ -1.31
YBX3-208ENST00000540447 Q6ZQT7 251 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 ZNF561-AS1K7EIQ3 104 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 MDFICQ9P1T7 246 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 STRCQ7RTU9 1775 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 GNRH2O43555 120 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 CLPSP04118 112 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 GP9P14770 177 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 ZNF134P52741 427 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 C11orf1Q9H5F2 150 aa6.84□□□□□ -1.31
YBX3-208ENST00000540447 NCOR1O75376 2440 aa6.84□□□□□ -1.32
YBX3-208ENST00000540447 IGHV4-4A0A075B6R2 117 aa6.84□□□□□ -1.32
YBX3-208ENST00000540447 LOXP28300 417 aaPredicted RBP6.84□□□□□ -1.32
YBX3-208ENST00000540447 GGNQ86UU5 652 aa6.84□□□□□ -1.32
YBX3-208ENST00000540447 A0A0G2JMZ2 1700 aa6.84□□□□□ -1.32
YBX3-208ENST00000540447 LRRC37A2A6NM11 1700 aa6.84□□□□□ -1.32
YBX3-208ENST00000540447 LRRC37AA6NMS7 1700 aa6.84□□□□□ -1.32
YBX3-208ENST00000540447 FAM223BA6NKX1 122 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 PF4P02776 101 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 ZNF833PQ6ZTB9 187 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 FAM223AQ8IWN6 122 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 PRORYQ9H606 182 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 ITGB4P16144 1822 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 ARTNQ5T4W7 220 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 NFE4Q86UQ8 179 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 C19orf71A6NCJ1 209 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 IGHV1-58A0A0C4DH39 117 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 A0A0J9YXY3 114 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 CD59P13987 128 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 FAM167A-AS1Q96KT0 104 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 CEP250Q9BV73 2442 aa6.83□□□□□ -1.32
YBX3-208ENST00000540447 PHF3Q92576 2039 aaKnown RBP6.83□□□□□ -1.32
YBX3-208ENST00000540447 SPRY2O43597 315 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 ZNF491Q8N8L2 437 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 MRPL36Q9P0J6 103 aaKnown RBP6.82□□□□□ -1.32
YBX3-208ENST00000540447 A0A0J9YY99 117 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 TRBV27A0A0K0K1C4 114 aa6.82□□□□□ -1.32
YBX3-208ENST00000540447 INTS1Q8N201 2190 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms