RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 SAPCD1Q5SSQ6 148 aa9.43□□□□□ -0.9
VPS28-210ENST00000529182 IBA57Q5T440 356 aaKnown RBP9.43□□□□□ -0.9
VPS28-210ENST00000529182 F5H768 121 aa9.42□□□□□ -0.9
VPS28-210ENST00000529182 SPINK4O60575 86 aa9.42□□□□□ -0.9
VPS28-210ENST00000529182 ATP5G1P05496 136 aa9.42□□□□□ -0.9
VPS28-210ENST00000529182 UBE2G1P62253 170 aa9.42□□□□□ -0.9
VPS28-210ENST00000529182 ZNF415Q09FC8 603 aa9.42□□□□□ -0.9
VPS28-210ENST00000529182 TDRG1Q3Y452 100 aa9.42□□□□□ -0.9
VPS28-210ENST00000529182 TMEM88Q6PEY1 159 aa9.42□□□□□ -0.9
VPS28-210ENST00000529182 FMC1Q96HJ9 113 aa9.42□□□□□ -0.9
VPS28-210ENST00000529182 MRPL16Q9NX20 251 aaKnown RBP9.42□□□□□ -0.9
VPS28-210ENST00000529182 TRGV11A0A075B6L2 103 aa9.41□□□□□ -0.9
VPS28-210ENST00000529182 TYMSP04818 313 aa9.41□□□□□ -0.9
VPS28-210ENST00000529182 PFN1P07737 140 aaKnown RBP9.41□□□□□ -0.9
VPS28-210ENST00000529182 TCTAP57738 103 aa9.41□□□□□ -0.9
VPS28-210ENST00000529182 ZC2HC1AQ96GY0 325 aa9.41□□□□□ -0.9
VPS28-210ENST00000529182 TCEAL7Q9BRU2 100 aa9.41□□□□□ -0.9
VPS28-210ENST00000529182 NDUFAF3Q9BU61 184 aa9.41□□□□□ -0.9
VPS28-210ENST00000529182 MANBALQ9NQG1 85 aa9.41□□□□□ -0.9
VPS28-210ENST00000529182 IGHV3-16A0A0C4DH30 117 aa9.4□□□□□ -0.9
VPS28-210ENST00000529182 TEX46H3BTG2 121 aa9.4□□□□□ -0.9
VPS28-210ENST00000529182 NHLRC2Q8NBF2 726 aa9.4□□□□□ -0.9
VPS28-210ENST00000529182 SDF2L1Q9HCN8 221 aa9.4□□□□□ -0.9
VPS28-210ENST00000529182 TRGV2A0A075B6R0 118 aa9.39□□□□□ -0.91
VPS28-210ENST00000529182 LTAP01374 205 aa9.39□□□□□ -0.91
VPS28-210ENST00000529182 HOXA5P20719 270 aa9.39□□□□□ -0.91
VPS28-210ENST00000529182 CRIP1P50238 77 aa9.39□□□□□ -0.91
VPS28-210ENST00000529182 OR5I1Q13606 314 aa9.39□□□□□ -0.91
VPS28-210ENST00000529182 LGALS9CQ6DKI2 356 aa9.39□□□□□ -0.91
VPS28-210ENST00000529182 KCNS1Q96KK3 526 aa9.39□□□□□ -0.91
VPS28-210ENST00000529182 FAM210BQ96KR6 192 aa9.39□□□□□ -0.91
VPS28-210ENST00000529182 ZFP30Q9Y2G7 519 aa9.39□□□□□ -0.91
VPS28-210ENST00000529182 TRBV6-1A0A0K0K1D8 114 aa9.38□□□□□ -0.91
VPS28-210ENST00000529182 IGHV3-53P01767 116 aa9.38□□□□□ -0.91
VPS28-210ENST00000529182 DERL1Q9BUN8 251 aa9.38□□□□□ -0.91
VPS28-210ENST00000529182 IGKV3D-20A0A0C4DH25 116 aa9.37□□□□□ -0.91
VPS28-210ENST00000529182 FABP5P3A8MUU1 101 aa9.37□□□□□ -0.91
VPS28-210ENST00000529182 SH2D1AO60880 128 aa9.37□□□□□ -0.91
VPS28-210ENST00000529182 BCL2P10415 239 aa9.37□□□□□ -0.91
VPS28-210ENST00000529182 LGALS9BQ3B8N2 356 aa9.37□□□□□ -0.91
VPS28-210ENST00000529182 COX8CQ7Z4L0 72 aa9.37□□□□□ -0.91
VPS28-210ENST00000529182 SPXQ9BT56 116 aa9.37□□□□□ -0.91
VPS28-210ENST00000529182 TRAV26-1A0A087WT03 109 aa9.36□□□□□ -0.91
VPS28-210ENST00000529182 A0A0J9YY99 117 aa9.36□□□□□ -0.91
VPS28-210ENST00000529182 M0R036 132 aa9.36□□□□□ -0.91
VPS28-210ENST00000529182 IFNA1P01562 189 aa9.36□□□□□ -0.91
VPS28-210ENST00000529182 RPL35P42766 123 aaKnown RBP9.36□□□□□ -0.91
VPS28-210ENST00000529182 BLOC1S1P78537 153 aa9.36□□□□□ -0.91
VPS28-210ENST00000529182 MEF2BQ02080 365 aaPredicted RBP9.36□□□□□ -0.91
VPS28-210ENST00000529182 BAGE2Q86Y30 109 aa9.36□□□□□ -0.91
VPS28-210ENST00000529182 C11orf52Q96A22 123 aa9.36□□□□□ -0.91
VPS28-210ENST00000529182 C18orf15Q96N68 181 aa9.36□□□□□ -0.91
VPS28-210ENST00000529182 DNAH6Q9C0G6 4158 aa9.36□□□□□ -0.91
VPS28-210ENST00000529182 NUDT3O95989 172 aa9.35□□□□□ -0.91
VPS28-210ENST00000529182 ORM1P02763 201 aa9.35□□□□□ -0.91
VPS28-210ENST00000529182 S100A9P06702 114 aaKnown RBP9.35□□□□□ -0.91
VPS28-210ENST00000529182 SFTA3P0C7M3 94 aa9.35□□□□□ -0.91
VPS28-210ENST00000529182 RNASE3P12724 160 aaKnown RBP9.35□□□□□ -0.91
VPS28-210ENST00000529182 ZNF674Q2M3X9 581 aa9.35□□□□□ -0.91
VPS28-210ENST00000529182 FAM162BQ5T6X4 162 aa9.35□□□□□ -0.91
VPS28-210ENST00000529182 RASL10AQ92737 203 aa9.35□□□□□ -0.91
VPS28-210ENST00000529182 TXNDC17Q9BRA2 123 aa9.35□□□□□ -0.91
VPS28-210ENST00000529182 MUC4Q99102 2169 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 TMSB15BA0A087X1C1 80 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 B4DEV8 164 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 M0R2P5 195 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 POM121L12Q8N7R1 296 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 C15orf53Q8NAA6 179 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 ZNF479Q96JC4 524 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 C9orf85Q96MD7 179 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 MLST8Q9BVC4 326 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 VAX2Q9UIW0 290 aa9.34□□□□□ -0.91
VPS28-210ENST00000529182 RAB19A4D1S5 217 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 GRIFINA4D1Z8 144 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 KRBOX1C9JBD0 128 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 C9JCJ5 164 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 PDE6DO43924 150 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 P0DMU3 169 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 FAM231AP0DMU4 169 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 FAM231CP0DMU5 169 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 ASIPP42127 132 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 FHL2Q14192 279 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 PRR27Q6MZM9 219 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 ZNF575Q86XF7 245 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 LYPD6BQ8NI32 183 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 PCNPQ8WW12 178 aaKnown RBP9.33□□□□□ -0.92
VPS28-210ENST00000529182 VSIG2Q96IQ7 327 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 MED9Q9NWA0 146 aa9.33□□□□□ -0.92
VPS28-210ENST00000529182 S100A4P26447 101 aaKnown RBP9.32□□□□□ -0.92
VPS28-210ENST00000529182 RPL19P84098 196 aaKnown RBP9.32□□□□□ -0.92
VPS28-210ENST00000529182 CENPWQ5EE01 88 aa9.32□□□□□ -0.92
VPS28-210ENST00000529182 RBFOX3A6NFN3 312 aa9.31□□□□□ -0.92
VPS28-210ENST00000529182 PGPEP1LA6NFU8 196 aa9.31□□□□□ -0.92
VPS28-210ENST00000529182 H3BVH4 76 aa9.31□□□□□ -0.92
VPS28-210ENST00000529182 IGLV2-8P01709 118 aa9.31□□□□□ -0.92
VPS28-210ENST00000529182 TAGLN2P37802 199 aaKnown RBP9.31□□□□□ -0.92
VPS28-210ENST00000529182 LINC01559Q495D7 138 aa9.31□□□□□ -0.92
VPS28-210ENST00000529182 ZNF876PQ49A33 203 aa9.31□□□□□ -0.92
VPS28-210ENST00000529182 UBE2DNLQ8IWF7 75 aa9.31□□□□□ -0.92
VPS28-210ENST00000529182 DNAH10Q8IVF4 4471 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms