RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 C11orf21Q9P2W6 132 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 DNAH9Q9NYC9 4486 aa10.75□□□□□ -0.69
NUP54-213ENST00000513352 B4DEV8 164 aa10.75□□□□□ -0.69
NUP54-213ENST00000513352 C9JCJ5 164 aa10.75□□□□□ -0.69
NUP54-213ENST00000513352 CRIP1P50238 77 aa10.75□□□□□ -0.69
NUP54-213ENST00000513352 OR5I1Q13606 314 aa10.75□□□□□ -0.69
NUP54-213ENST00000513352 DAZAP1Q96EP5 407 aaKnown RBP10.75□□□□□ -0.69
NUP54-213ENST00000513352 SMIM12Q96EX1 92 aa10.75□□□□□ -0.69
NUP54-213ENST00000513352 BIN3Q9NQY0 253 aa10.75□□□□□ -0.69
NUP54-213ENST00000513352 GSN-AS1Q9NRJ2 163 aa10.75□□□□□ -0.69
NUP54-213ENST00000513352 TMSB15BA0A087X1C1 80 aa10.74□□□□□ -0.69
NUP54-213ENST00000513352 CXorf65A6NEN9 183 aa10.74□□□□□ -0.69
NUP54-213ENST00000513352 GNRH2O43555 120 aa10.74□□□□□ -0.69
NUP54-213ENST00000513352 IGLV2-8P01709 118 aa10.74□□□□□ -0.69
NUP54-213ENST00000513352 TYMSP04818 313 aa10.74□□□□□ -0.69
NUP54-213ENST00000513352 SOHLH1Q5JUK2 328 aa10.74□□□□□ -0.69
NUP54-213ENST00000513352 FAM222AQ5U5X8 452 aa10.74□□□□□ -0.69
NUP54-213ENST00000513352 NOP10Q9NPE3 64 aaKnown RBP10.74□□□□□ -0.69
NUP54-213ENST00000513352 CELA1Q9UNI1 258 aa10.74□□□□□ -0.69
NUP54-213ENST00000513352 TIMM8BQ9Y5J9 83 aaPredicted RBP10.74□□□□□ -0.69
NUP54-213ENST00000513352 SFTA3P0C7M3 94 aa10.73□□□□□ -0.69
NUP54-213ENST00000513352 SPART-AS1P0CW21 52 aa10.73□□□□□ -0.69
NUP54-213ENST00000513352 S100A4P26447 101 aaKnown RBP10.73□□□□□ -0.69
NUP54-213ENST00000513352 TDRG1Q3Y452 100 aa10.73□□□□□ -0.69
NUP54-213ENST00000513352 FAM74A3Q4VXF1 159 aa10.73□□□□□ -0.69
NUP54-213ENST00000513352 OCC1Q8TAD7 63 aa10.73□□□□□ -0.69
NUP54-213ENST00000513352 C11orf45Q8TAV5 145 aa10.73□□□□□ -0.69
NUP54-213ENST00000513352 EDA2RQ9HAV5 297 aa10.73□□□□□ -0.69
NUP54-213ENST00000513352 STAB2Q8WWQ8 2551 aa10.73□□□□□ -0.69
NUP54-213ENST00000513352 TEX48A0A1B0GUV7 120 aa10.72□□□□□ -0.69
NUP54-213ENST00000513352 PLAC8L1A1L4L8 177 aa10.72□□□□□ -0.69
NUP54-213ENST00000513352 ASIPP42127 132 aa10.72□□□□□ -0.69
NUP54-213ENST00000513352 TCL1AP56279 114 aa10.72□□□□□ -0.69
NUP54-213ENST00000513352 IBA57Q5T440 356 aaKnown RBP10.72□□□□□ -0.69
NUP54-213ENST00000513352 MDFICQ9P1T7 246 aa10.72□□□□□ -0.69
NUP54-213ENST00000513352 HUWE1Q7Z6Z7 4374 aaKnown RBP10.72□□□□□ -0.69
NUP54-213ENST00000513352 IGKV3D-20A0A0C4DH25 116 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 IGHV3-16A0A0C4DH30 117 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 GRIFINA4D1Z8 144 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 KRBOX1C9JBD0 128 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 K7EN84 100 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 P01737 135 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 DEFB130BP0DP73 79 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 DEFB130AP0DP74 79 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 NANOS2P60321 138 aaKnown RBP10.71□□□□□ -0.69
NUP54-213ENST00000513352 DAD1P61803 113 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 RPL19P84098 196 aaKnown RBP10.71□□□□□ -0.69
NUP54-213ENST00000513352 TMEM241Q24JQ0 296 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 LINC01559Q495D7 138 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 C11orf72Q8NBR9 251 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 IL17DQ8TAD2 202 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 WWC2-AS2Q96NR7 200 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 DKK2Q9UBU2 259 aa10.71□□□□□ -0.69
NUP54-213ENST00000513352 TRGV1A0A0A0MS02 117 aa10.7□□□□□ -0.7
NUP54-213ENST00000513352 LINC00862A6NCI5 91 aa10.7□□□□□ -0.7
NUP54-213ENST00000513352 LYRM9A8MSI8 78 aa10.7□□□□□ -0.7
NUP54-213ENST00000513352 ADIRFQ15847 76 aa10.7□□□□□ -0.7
NUP54-213ENST00000513352 UQCC3Q6UW78 93 aa10.7□□□□□ -0.7
NUP54-213ENST00000513352 OR2D3Q8NGH3 330 aa10.7□□□□□ -0.7
NUP54-213ENST00000513352 MRPL16Q9NX20 251 aaKnown RBP10.7□□□□□ -0.7
NUP54-213ENST00000513352 NAT8Q9UHE5 227 aa10.7□□□□□ -0.7
NUP54-213ENST00000513352 LY96Q9Y6Y9 160 aa10.7□□□□□ -0.7
NUP54-213ENST00000513352 GAGE12BA1L429 117 aa10.69□□□□□ -0.7
NUP54-213ENST00000513352 H3BVH4 76 aa10.69□□□□□ -0.7
NUP54-213ENST00000513352 GAGE7O76087 117 aa10.69□□□□□ -0.7
NUP54-213ENST00000513352 GAGE12FP0CL80 117 aa10.69□□□□□ -0.7
NUP54-213ENST00000513352 GAGE12GP0CL81 117 aa10.69□□□□□ -0.7
NUP54-213ENST00000513352 GAGE12IP0CL82 117 aa10.69□□□□□ -0.7
NUP54-213ENST00000513352 LINC01551Q86U37 167 aa10.69□□□□□ -0.7
NUP54-213ENST00000513352 RNASE7Q9H1E1 156 aaKnown RBP10.69□□□□□ -0.7
NUP54-213ENST00000513352 C19orf71A6NCJ1 209 aa10.68□□□□□ -0.7
NUP54-213ENST00000513352 DAZ2Q13117 558 aaKnown RBP10.68□□□□□ -0.7
NUP54-213ENST00000513352 Q6ZTI0 123 aa10.68□□□□□ -0.7
NUP54-213ENST00000513352 NUDT10Q8NFP7 164 aa10.68□□□□□ -0.7
NUP54-213ENST00000513352 NUDT11Q96G61 164 aa10.68□□□□□ -0.7
NUP54-213ENST00000513352 SPXQ9BT56 116 aa10.68□□□□□ -0.7
NUP54-213ENST00000513352 XKRY2A2RUG3 117 aa10.67□□□□□ -0.7
NUP54-213ENST00000513352 HTN3P15516 51 aa10.67□□□□□ -0.7
NUP54-213ENST00000513352 ERVFC1-1P60608 527 aa10.67□□□□□ -0.7
NUP54-213ENST00000513352 RPS20P60866 119 aaKnown RBP10.67□□□□□ -0.7
NUP54-213ENST00000513352 RPL23P62829 140 aaKnown RBP10.67□□□□□ -0.7
NUP54-213ENST00000513352 C12orf74Q32Q52 190 aa10.67□□□□□ -0.7
NUP54-213ENST00000513352 RPP21Q9H633 154 aaKnown RBP10.67□□□□□ -0.7
NUP54-213ENST00000513352 TRGV2A0A075B6R0 118 aa10.66□□□□□ -0.7
NUP54-213ENST00000513352 M0R2P5 195 aa10.66□□□□□ -0.7
NUP54-213ENST00000513352 GATCO43716 136 aaKnown RBP10.66□□□□□ -0.7
NUP54-213ENST00000513352 GZMBP10144 247 aa10.66□□□□□ -0.7
NUP54-213ENST00000513352 RNASE3P12724 160 aaKnown RBP10.66□□□□□ -0.7
NUP54-213ENST00000513352 Q6ZTC4 211 aa10.66□□□□□ -0.7
NUP54-213ENST00000513352 TPPP3Q9BW30 176 aa10.66□□□□□ -0.7
NUP54-213ENST00000513352 F8W036 122 aa10.65□□□□□ -0.7
NUP54-213ENST00000513352 SPINK4O60575 86 aa10.65□□□□□ -0.7
NUP54-213ENST00000513352 ARMS2P0C7Q2 107 aa10.65□□□□□ -0.7
NUP54-213ENST00000513352 ZFAND6Q6FIF0 208 aa10.65□□□□□ -0.7
NUP54-213ENST00000513352 C15orf54Q8N8G6 183 aa10.65□□□□□ -0.7
NUP54-213ENST00000513352 MUC7Q8TAX7 377 aa10.65□□□□□ -0.7
NUP54-213ENST00000513352 ISOC2Q96AB3 205 aa10.65□□□□□ -0.7
NUP54-213ENST00000513352 C9orf85Q96MD7 179 aa10.65□□□□□ -0.7
NUP54-213ENST00000513352 IL36BQ9NZH7 164 aa10.65□□□□□ -0.7
NUP54-213ENST00000513352 TMEM218A2RU14 115 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms