RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SDF2L1Q9HCN8 221 aa21.23■□□□□ 0.99
LIMCH1-211ENST00000509638 CELA1Q9UNI1 258 aa21.23■□□□□ 0.99
LIMCH1-211ENST00000509638 C11orf72Q8NBR9 251 aa21.22■□□□□ 0.99
LIMCH1-211ENST00000509638 KCNS1Q96KK3 526 aa21.22■□□□□ 0.99
LIMCH1-211ENST00000509638 ZNF727A8MUV8 499 aa21.21■□□□□ 0.99
LIMCH1-211ENST00000509638 TRGV11A0A075B6L2 103 aa21.2■□□□□ 0.98
LIMCH1-211ENST00000509638 M0R036 132 aa21.2■□□□□ 0.98
LIMCH1-211ENST00000509638 TYMSP04818 313 aa21.2■□□□□ 0.98
LIMCH1-211ENST00000509638 GSN-AS1Q9NRJ2 163 aa21.2■□□□□ 0.98
LIMCH1-211ENST00000509638 SNURFLB1AK76 121 aa21.19■□□□□ 0.98
LIMCH1-211ENST00000509638 ORM1P02763 201 aa21.19■□□□□ 0.98
LIMCH1-211ENST00000509638 IBA57Q5T440 356 aaKnown RBP21.19■□□□□ 0.98
LIMCH1-211ENST00000509638 FAM222AQ5U5X8 452 aa21.19■□□□□ 0.98
LIMCH1-211ENST00000509638 ZNF415Q09FC8 603 aa21.19■□□□□ 0.98
LIMCH1-211ENST00000509638 DKK2Q9UBU2 259 aa21.19■□□□□ 0.98
LIMCH1-211ENST00000509638 TIMM8BQ9Y5J9 83 aaPredicted RBP21.19■□□□□ 0.98
LIMCH1-211ENST00000509638 IGKV3D-20A0A0C4DH25 116 aa21.18■□□□□ 0.98
LIMCH1-211ENST00000509638 GNRH2O43555 120 aa21.18■□□□□ 0.98
LIMCH1-211ENST00000509638 OCC1Q8TAD7 63 aa21.18■□□□□ 0.98
LIMCH1-211ENST00000509638 NOP10Q9NPE3 64 aaKnown RBP21.18■□□□□ 0.98
LIMCH1-211ENST00000509638 MDFICQ9P1T7 246 aa21.18■□□□□ 0.98
LIMCH1-211ENST00000509638 B4DEV8 164 aa21.17■□□□□ 0.98
LIMCH1-211ENST00000509638 K7EN84 100 aa21.17■□□□□ 0.98
LIMCH1-211ENST00000509638 TCL1AP56279 114 aa21.17■□□□□ 0.98
LIMCH1-211ENST00000509638 OR5I1Q13606 314 aa21.17■□□□□ 0.98
LIMCH1-211ENST00000509638 IL17DQ8TAD2 202 aa21.17■□□□□ 0.98
LIMCH1-211ENST00000509638 C11orf45Q8TAV5 145 aa21.17■□□□□ 0.98
LIMCH1-211ENST00000509638 SPART-AS1P0CW21 52 aa21.16■□□□□ 0.98
LIMCH1-211ENST00000509638 LINC01559Q495D7 138 aa21.16■□□□□ 0.98
LIMCH1-211ENST00000509638 WWC2-AS2Q96NR7 200 aa21.16■□□□□ 0.98
LIMCH1-211ENST00000509638 IGHV3-16A0A0C4DH30 117 aa21.15■□□□□ 0.98
LIMCH1-211ENST00000509638 KRBOX1C9JBD0 128 aa21.15■□□□□ 0.98
LIMCH1-211ENST00000509638 FAM74A3Q4VXF1 159 aa21.15■□□□□ 0.98
LIMCH1-211ENST00000509638 SOHLH1Q5JUK2 328 aa21.15■□□□□ 0.98
LIMCH1-211ENST00000509638 COMMD7Q86VX2 200 aa21.15■□□□□ 0.98
LIMCH1-211ENST00000509638 BIN3Q9NQY0 253 aa21.15■□□□□ 0.98
LIMCH1-211ENST00000509638 TMSB15BA0A087X1C1 80 aa21.14■□□□□ 0.98
LIMCH1-211ENST00000509638 TEX48A0A1B0GUV7 120 aa21.14■□□□□ 0.98
LIMCH1-211ENST00000509638 CXorf65A6NEN9 183 aa21.14■□□□□ 0.98
LIMCH1-211ENST00000509638 LYRM9A8MSI8 78 aa21.14■□□□□ 0.98
LIMCH1-211ENST00000509638 SFTA3P0C7M3 94 aa21.14■□□□□ 0.98
LIMCH1-211ENST00000509638 NANOS2P60321 138 aaKnown RBP21.14■□□□□ 0.98
LIMCH1-211ENST00000509638 RPL19P84098 196 aaKnown RBP21.14■□□□□ 0.97
LIMCH1-211ENST00000509638 LY96Q9Y6Y9 160 aa21.14■□□□□ 0.97
LIMCH1-211ENST00000509638 C19orf71A6NCJ1 209 aa21.13■□□□□ 0.97
LIMCH1-211ENST00000509638 DAZ2Q13117 558 aaKnown RBP21.13■□□□□ 0.97
LIMCH1-211ENST00000509638 LINC01551Q86U37 167 aa21.13■□□□□ 0.97
LIMCH1-211ENST00000509638 LINC00862A6NCI5 91 aa21.12■□□□□ 0.97
LIMCH1-211ENST00000509638 DAZAP1Q96EP5 407 aaKnown RBP21.12■□□□□ 0.97
LIMCH1-211ENST00000509638 UQCC3Q6UW78 93 aa21.11■□□□□ 0.97
LIMCH1-211ENST00000509638 ASIPP42127 132 aa21.1■□□□□ 0.97
LIMCH1-211ENST00000509638 CSMD3Q7Z407 3707 aa21.1■□□□□ 0.97
LIMCH1-211ENST00000509638 GRIFINA4D1Z8 144 aa21.1■□□□□ 0.97
LIMCH1-211ENST00000509638 C12orf74Q32Q52 190 aa21.1■□□□□ 0.97
LIMCH1-211ENST00000509638 P01737 135 aa21.09■□□□□ 0.97
LIMCH1-211ENST00000509638 DEFB130BP0DP73 79 aa21.09■□□□□ 0.97
LIMCH1-211ENST00000509638 DEFB130AP0DP74 79 aa21.09■□□□□ 0.97
LIMCH1-211ENST00000509638 S100A4P26447 101 aaKnown RBP21.09■□□□□ 0.97
LIMCH1-211ENST00000509638 TMEM241Q24JQ0 296 aa21.09■□□□□ 0.97
LIMCH1-211ENST00000509638 RNASE7Q9H1E1 156 aaKnown RBP21.09■□□□□ 0.97
LIMCH1-211ENST00000509638 NAT8Q9UHE5 227 aa21.09■□□□□ 0.97
LIMCH1-211ENST00000509638 RNASE3P12724 160 aaKnown RBP21.08■□□□□ 0.97
LIMCH1-211ENST00000509638 DAD1P61803 113 aa21.08■□□□□ 0.97
LIMCH1-211ENST00000509638 Q6ZTI0 123 aa21.08■□□□□ 0.97
LIMCH1-211ENST00000509638 TRGV1A0A0A0MS02 117 aa21.07■□□□□ 0.96
LIMCH1-211ENST00000509638 Q6ZTC4 211 aa21.07■□□□□ 0.96
LIMCH1-211ENST00000509638 ZNF575Q86XF7 245 aa21.07■□□□□ 0.96
LIMCH1-211ENST00000509638 C9orf85Q96MD7 179 aa21.07■□□□□ 0.96
LIMCH1-211ENST00000509638 MRPL16Q9NX20 251 aaKnown RBP21.07■□□□□ 0.96
LIMCH1-211ENST00000509638 H3BVH4 76 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 SPINK4O60575 86 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 OR2D3Q8NGH3 330 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 SPXQ9BT56 116 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 MUC4Q99102 2169 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 GAGE12BA1L429 117 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 GAGE7O76087 117 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 GAGE12FP0CL80 117 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 GAGE12GP0CL81 117 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 GAGE12IP0CL82 117 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 RPL23P62829 140 aaKnown RBP21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 ADIRFQ15847 76 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 NUDT10Q8NFP7 164 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 NUDT11Q96G61 164 aa21.06■□□□□ 0.96
LIMCH1-211ENST00000509638 DNLZQ5SXM8 178 aa21.05■□□□□ 0.96
LIMCH1-211ENST00000509638 LINC00612Q8N6U2 182 aa21.05■□□□□ 0.96
LIMCH1-211ENST00000509638 MUC7Q8TAX7 377 aa21.05■□□□□ 0.96
LIMCH1-211ENST00000509638 IL36BQ9NZH7 164 aa21.04■□□□□ 0.96
LIMCH1-211ENST00000509638 CXCL1P09341 107 aa21.03■□□□□ 0.96
LIMCH1-211ENST00000509638 ERVFC1-1P60608 527 aa21.03■□□□□ 0.96
LIMCH1-211ENST00000509638 LGALS9BQ3B8N2 356 aa21.03■□□□□ 0.96
LIMCH1-211ENST00000509638 RPP21Q9H633 154 aaKnown RBP21.03■□□□□ 0.96
LIMCH1-211ENST00000509638 M0R2P5 195 aa21.02■□□□□ 0.96
LIMCH1-211ENST00000509638 FAM231DQ6ZW35 169 aa21.02■□□□□ 0.96
LIMCH1-211ENST00000509638 ARMS2P0C7Q2 107 aa21.02■□□□□ 0.95
LIMCH1-211ENST00000509638 ISOC2Q96AB3 205 aa21.02■□□□□ 0.95
LIMCH1-211ENST00000509638 GZMBP10144 247 aa21.01■□□□□ 0.95
LIMCH1-211ENST00000509638 RPS20P60866 119 aaKnown RBP21.01■□□□□ 0.95
LIMCH1-211ENST00000509638 TMEM218A2RU14 115 aa21■□□□□ 0.95
LIMCH1-211ENST00000509638 STARD9Q9P2P6 4700 aa21■□□□□ 0.95
LIMCH1-211ENST00000509638 TRGV2A0A075B6R0 118 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms