RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 LINC00467Q9BRT7 94 aa7.34□□□□□ -1.23
UPF2-204ENST00000460569 SDF2L1Q9HCN8 221 aa7.34□□□□□ -1.23
UPF2-204ENST00000460569 TP53TG3Q9ULZ0 132 aa7.34□□□□□ -1.23
UPF2-204ENST00000460569 LY96Q9Y6Y9 160 aa7.34□□□□□ -1.23
UPF2-204ENST00000460569 U3KQK5 164 aa7.34□□□□□ -1.23
UPF2-204ENST00000460569 TRGV11A0A075B6L2 103 aa7.33□□□□□ -1.24
UPF2-204ENST00000460569 TMSB15BA0A087X1C1 80 aa7.33□□□□□ -1.24
UPF2-204ENST00000460569 B4DEV8 164 aa7.33□□□□□ -1.24
UPF2-204ENST00000460569 TYMSP04818 313 aa7.33□□□□□ -1.24
UPF2-204ENST00000460569 EMP1P54849 157 aa7.33□□□□□ -1.24
UPF2-204ENST00000460569 ZNF415Q09FC8 603 aa7.33□□□□□ -1.24
UPF2-204ENST00000460569 ADIRFQ15847 76 aa7.33□□□□□ -1.24
UPF2-204ENST00000460569 TDRG1Q3Y452 100 aa7.33□□□□□ -1.24
UPF2-204ENST00000460569 ZNF493Q6ZR52 646 aa7.33□□□□□ -1.24
UPF2-204ENST00000460569 RNASE8Q8TDE3 154 aaKnown RBP7.33□□□□□ -1.24
UPF2-204ENST00000460569 PRKDCP78527 4128 aaKnown RBP7.33□□□□□ -1.24
UPF2-204ENST00000460569 IGKV3D-20A0A0C4DH25 116 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 A0A0J9YWU9 116 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 TMEM218A2RU14 115 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 TMEM189A5PLL7 270 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 SNURFLB1AK76 121 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 F8W036 122 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 GNRH2O43555 120 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 P01737 135 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 RPL23P62829 140 aaKnown RBP7.32□□□□□ -1.24
UPF2-204ENST00000460569 RPL19P84098 196 aaKnown RBP7.32□□□□□ -1.24
UPF2-204ENST00000460569 LINC01559Q495D7 138 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 RNASE7Q9H1E1 156 aaKnown RBP7.32□□□□□ -1.24
UPF2-204ENST00000460569 C11orf68Q9H3H3 251 aaKnown RBP7.32□□□□□ -1.24
UPF2-204ENST00000460569 GSN-AS1Q9NRJ2 163 aa7.32□□□□□ -1.24
UPF2-204ENST00000460569 GRIFINA4D1Z8 144 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 C19orf71A6NCJ1 209 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 KRBOX1C9JBD0 128 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 ADCYAP1P18509 176 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 ASIPP42127 132 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 TCL1AP56279 114 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 ERVFC1-1P60608 527 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 IBA57Q5T440 356 aaKnown RBP7.31□□□□□ -1.24
UPF2-204ENST00000460569 C11orf72Q8NBR9 251 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 NUDT10Q8NFP7 164 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 OR2D3Q8NGH3 330 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 ISOC2Q96AB3 205 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 NUDT11Q96G61 164 aa7.31□□□□□ -1.24
UPF2-204ENST00000460569 COL7A1Q02388 2944 aa7.3□□□□□ -1.24
UPF2-204ENST00000460569 IGHV3-16A0A0C4DH30 117 aa7.3□□□□□ -1.24
UPF2-204ENST00000460569 PLAC8L1A1L4L8 177 aa7.3□□□□□ -1.24
UPF2-204ENST00000460569 GATCO43716 136 aaKnown RBP7.3□□□□□ -1.24
UPF2-204ENST00000460569 S100A4P26447 101 aaKnown RBP7.3□□□□□ -1.24
UPF2-204ENST00000460569 NDUFA5Q16718 116 aa7.3□□□□□ -1.24
UPF2-204ENST00000460569 SLC7A5P1Q8MH63 180 aa7.3□□□□□ -1.24
UPF2-204ENST00000460569 SEC11CQ9BY50 192 aa7.3□□□□□ -1.24
UPF2-204ENST00000460569 RPP21Q9H633 154 aaKnown RBP7.3□□□□□ -1.24
UPF2-204ENST00000460569 MDFICQ9P1T7 246 aa7.3□□□□□ -1.24
UPF2-204ENST00000460569 TIMM8BQ9Y5J9 83 aaPredicted RBP7.3□□□□□ -1.24
UPF2-204ENST00000460569 STAB2Q8WWQ8 2551 aa7.3□□□□□ -1.24
UPF2-204ENST00000460569 XKRY2A2RUG3 117 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 H3BVH4 76 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 RPS20P60866 119 aaKnown RBP7.29□□□□□ -1.24
UPF2-204ENST00000460569 PNRC1Q12796 327 aaPredicted RBP7.29□□□□□ -1.24
UPF2-204ENST00000460569 FAM222AQ5U5X8 452 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 FAM231DQ6ZW35 169 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 C15orf54Q8N8G6 183 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 IL17DQ8TAD2 202 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 SFRP2Q96HF1 295 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 NOP10Q9NPE3 64 aaKnown RBP7.29□□□□□ -1.24
UPF2-204ENST00000460569 OSTCQ9NRP0 149 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 CELA1Q9UNI1 258 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 DNAH9Q9NYC9 4486 aa7.29□□□□□ -1.24
UPF2-204ENST00000460569 TEX48A0A1B0GUV7 120 aa7.28□□□□□ -1.24
UPF2-204ENST00000460569 LYRM9A8MSI8 78 aa7.28□□□□□ -1.24
UPF2-204ENST00000460569 CXCL1P09341 107 aa7.28□□□□□ -1.24
UPF2-204ENST00000460569 SPART-AS1P0CW21 52 aa7.28□□□□□ -1.24
UPF2-204ENST00000460569 GZMBP10144 247 aa7.28□□□□□ -1.24
UPF2-204ENST00000460569 RNASE3P12724 160 aaKnown RBP7.28□□□□□ -1.24
UPF2-204ENST00000460569 OR10G8Q8NGN5 311 aa7.28□□□□□ -1.24
UPF2-204ENST00000460569 C9orf85Q96MD7 179 aa7.28□□□□□ -1.24
UPF2-204ENST00000460569 SPXQ9BT56 116 aa7.28□□□□□ -1.24
UPF2-204ENST00000460569 DKK2Q9UBU2 259 aa7.28□□□□□ -1.24
UPF2-204ENST00000460569 TRGV1A0A0A0MS02 117 aa7.27□□□□□ -1.25
UPF2-204ENST00000460569 CXorf65A6NEN9 183 aa7.27□□□□□ -1.25
UPF2-204ENST00000460569 ARMS2P0C7Q2 107 aa7.27□□□□□ -1.25
UPF2-204ENST00000460569 DAZ2Q13117 558 aaKnown RBP7.27□□□□□ -1.25
UPF2-204ENST00000460569 DNLZQ5SXM8 178 aa7.27□□□□□ -1.25
UPF2-204ENST00000460569 FER1L6-AS1Q8NA97 138 aa7.27□□□□□ -1.25
UPF2-204ENST00000460569 TPPP3Q9BW30 176 aa7.27□□□□□ -1.25
UPF2-204ENST00000460569 EDA2RQ9HAV5 297 aa7.27□□□□□ -1.25
UPF2-204ENST00000460569 MRPL16Q9NX20 251 aaKnown RBP7.27□□□□□ -1.25
UPF2-204ENST00000460569 IL36BQ9NZH7 164 aa7.27□□□□□ -1.25
UPF2-204ENST00000460569 CARHSP1Q9Y2V2 147 aaKnown RBP7.27□□□□□ -1.25
UPF2-204ENST00000460569 HUWE1Q7Z6Z7 4374 aaKnown RBP7.27□□□□□ -1.25
UPF2-204ENST00000460569 GAGE12BA1L429 117 aa7.26□□□□□ -1.25
UPF2-204ENST00000460569 A8MWL6 223 aa7.26□□□□□ -1.25
UPF2-204ENST00000460569 M0R2P5 195 aa7.26□□□□□ -1.25
UPF2-204ENST00000460569 SPINK4O60575 86 aa7.26□□□□□ -1.25
UPF2-204ENST00000460569 GAGE7O76087 117 aa7.26□□□□□ -1.25
UPF2-204ENST00000460569 GAGE12FP0CL80 117 aa7.26□□□□□ -1.25
UPF2-204ENST00000460569 GAGE12GP0CL81 117 aa7.26□□□□□ -1.25
UPF2-204ENST00000460569 GAGE12IP0CL82 117 aa7.26□□□□□ -1.25
UPF2-204ENST00000460569 DEFB130BP0DP73 79 aa7.26□□□□□ -1.25
UPF2-204ENST00000460569 DEFB130AP0DP74 79 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms