RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GCGP01275 180 aa8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 TYMSP04818 313 aa8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 FHL2Q14192 279 aa8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 ESRGQ1W209 222 aa8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 TMUB2Q71RG4 321 aa8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 ZNRF2Q8NHG8 242 aa8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 RASL10AQ92737 203 aa8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 KCNS1Q96KK3 526 aa8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 ZNF471Q9BX82 626 aaPredicted RBP8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 NKX6-2Q9C056 277 aaPredicted RBP8.84□□□□□ -0.99
PRPF40A-203ENST00000448428 A0A096LPF7 62 aa8.83□□□□□ -1
PRPF40A-203ENST00000448428 SMUG1Q53HV7 270 aa8.83□□□□□ -1
PRPF40A-203ENST00000448428 SAPCD1Q5SSQ6 148 aa8.83□□□□□ -1
PRPF40A-203ENST00000448428 STOML3Q8TAV4 291 aa8.83□□□□□ -1
PRPF40A-203ENST00000448428 SDF2L1Q9HCN8 221 aa8.83□□□□□ -1
PRPF40A-203ENST00000448428 HHLA3Q9XRX5 114 aa8.83□□□□□ -1
PRPF40A-203ENST00000448428 DNAH6Q9C0G6 4158 aa8.83□□□□□ -1
PRPF40A-203ENST00000448428 UMAD1C9J7I0 102 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 M0R2P5 195 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 PEX7O00628 323 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 PAX4O43316 350 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 PFN1P07737 140 aaKnown RBP8.82□□□□□ -1
PRPF40A-203ENST00000448428 SFTA3P0C7M3 94 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 CRYBA4P53673 196 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 Q6ZNX1 250 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 LINC00336Q6ZUF6 198 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 FAM213BQ8TBF2 198 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 SFT2D1Q8WV19 159 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 MBD3L1Q8WWY6 194 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 HIST1H2BAQ96A08 127 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 ZNF479Q96JC4 524 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 PRO0255Q9UI72 69 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 ARL2-SNX15V9GYD0 113 aa8.82□□□□□ -1
PRPF40A-203ENST00000448428 PFDN1O60925 122 aa8.81□□□□□ -1
PRPF40A-203ENST00000448428 PPT1P50897 306 aa8.81□□□□□ -1
PRPF40A-203ENST00000448428 EIF5AP63241 154 aaKnown RBP8.81□□□□□ -1
PRPF40A-203ENST00000448428 SLAQ13239 276 aa8.81□□□□□ -1
PRPF40A-203ENST00000448428 ZFP69Q49AA0 526 aa8.81□□□□□ -1
PRPF40A-203ENST00000448428 CST9LP1Q5W188 147 aa8.81□□□□□ -1
PRPF40A-203ENST00000448428 Q9H8V8 135 aa8.81□□□□□ -1
PRPF40A-203ENST00000448428 FRAS1Q86XX4 4008 aa8.81□□□□□ -1
PRPF40A-203ENST00000448428 TRGV4A0A0C4DH28 118 aa8.8□□□□□ -1
PRPF40A-203ENST00000448428 NBDYA0A0U1RRE5 68 aa8.8□□□□□ -1
PRPF40A-203ENST00000448428 PRSS29PA6NIE9 313 aa8.8□□□□□ -1
PRPF40A-203ENST00000448428 PAGE4O60829 102 aa8.8□□□□□ -1
PRPF40A-203ENST00000448428 LGALSLQ3ZCW2 172 aaPredicted RBP8.8□□□□□ -1
PRPF40A-203ENST00000448428 C1orf134Q5TEV5 83 aa8.8□□□□□ -1
PRPF40A-203ENST00000448428 TCTE3Q8IZS6 198 aa8.8□□□□□ -1
PRPF40A-203ENST00000448428 BIRC6Q9NR09 4857 aa8.79□□□□□ -1
PRPF40A-203ENST00000448428 TRAV4A0A0B4J268 109 aa8.79□□□□□ -1
PRPF40A-203ENST00000448428 A0A1B0GV50 99 aa8.79□□□□□ -1
PRPF40A-203ENST00000448428 FABP5P3A8MUU1 101 aa8.79□□□□□ -1
PRPF40A-203ENST00000448428 TPT1P13693 172 aaKnown RBP8.79□□□□□ -1
PRPF40A-203ENST00000448428 DPPA3Q6W0C5 159 aa8.79□□□□□ -1
PRPF40A-203ENST00000448428 Q86TA4 180 aa8.79□□□□□ -1
PRPF40A-203ENST00000448428 OR4C5Q8NGB2 326 aa8.79□□□□□ -1
PRPF40A-203ENST00000448428 UPK3BQ9BT76 320 aa8.79□□□□□ -1
PRPF40A-203ENST00000448428 MRPS16Q9Y3D3 137 aaKnown RBP8.79□□□□□ -1
PRPF40A-203ENST00000448428 ICOSQ9Y6W8 199 aa8.79□□□□□ -1
PRPF40A-203ENST00000448428 IGKV3D-20A0A0C4DH25 116 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 A0A1B0GVY2 172 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 C9JCJ5 164 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 H2AFB1P0C5Y9 115 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 RNASE3P12724 160 aaKnown RBP8.78□□□□□ -1
PRPF40A-203ENST00000448428 CRIP1P50238 77 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 ZNF876PQ49A33 203 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 ZC2HC1AQ96GY0 325 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 FMC1Q96HJ9 113 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 C9orf85Q96MD7 179 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 ZFP30Q9Y2G7 519 aa8.78□□□□□ -1
PRPF40A-203ENST00000448428 MRPL23Q16540 153 aaKnown RBP8.77□□□□□ -1.01
PRPF40A-203ENST00000448428 SOHLH1Q5JUK2 328 aa8.77□□□□□ -1.01
PRPF40A-203ENST00000448428 COX8CQ7Z4L0 72 aa8.77□□□□□ -1.01
PRPF40A-203ENST00000448428 TCEAL7Q9BRU2 100 aa8.77□□□□□ -1.01
PRPF40A-203ENST00000448428 DNAH10Q8IVF4 4471 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 TRBV6-1A0A0K0K1D8 114 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 PGPEP1LA6NFU8 196 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 K7EQD1 137 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 C1QBP02746 253 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 ORM1P02763 201 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 GYPEP15421 78 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 UBE2G1P62253 170 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 CCL20P78556 96 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 LYPD5Q6UWN5 251 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 PTH2Q96A98 100 aa8.76□□□□□ -1.01
PRPF40A-203ENST00000448428 RS1O15537 224 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 SH2D1AO60880 128 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 LTAP01374 205 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 AKR1C3P42330 323 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 ZNF506Q5JVG8 444 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 CFAP126Q5VTH2 177 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 NEGR1Q7Z3B1 354 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 ZNF575Q86XF7 245 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 C6orf223Q8N319 242 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 KRTAP1-5Q9BYS1 174 aa8.75□□□□□ -1.01
PRPF40A-203ENST00000448428 hCG_2014768A0A024R1R8 64 aa8.74□□□□□ -1.01
PRPF40A-203ENST00000448428 TRAV1-1A0A0B4J248 108 aa8.74□□□□□ -1.01
PRPF40A-203ENST00000448428 LOC100131303A0A0U1RQF7 123 aa8.74□□□□□ -1.01
PRPF40A-203ENST00000448428 SCO2A0A1W2PP80 73 aa8.74□□□□□ -1.01
PRPF40A-203ENST00000448428 B4DEV8 164 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms