RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 OR5I1Q13606 314 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 IBA57Q5T440 356 aaKnown RBP8.84□□□□□ -0.99
PTPRF-208ENST00000437607 COX8CQ7Z4L0 72 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 CLRN3Q8NCR9 226 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 SFRP2Q96HF1 295 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 DYNC1H1Q14204 4646 aaKnown RBP8.83□□□□□ -1
PTPRF-208ENST00000437607 PKD1P98161 4303 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 TRAV21A0A0B4J279 112 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 NUPR2A6NF83 97 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 PPP1R2P9O14990 202 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 P01737 135 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 MT-ND4LP03901 98 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 PFN1P07737 140 aaKnown RBP8.83□□□□□ -1
PTPRF-208ENST00000437607 PRR9Q5T870 116 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 GFI1BQ5VTD9 330 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 MORN3Q6PF18 240 aaPredicted RBP8.83□□□□□ -1
PTPRF-208ENST00000437607 CEMP1Q6PRD7 247 aaPredicted RBP8.83□□□□□ -1
PTPRF-208ENST00000437607 C1QTNF4Q9BXJ3 329 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 RYR1P21817 5038 aa8.83□□□□□ -1
PTPRF-208ENST00000437607 TRAV12-2A0A075B6T6 113 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 ZNF705GA8MUZ8 300 aaPredicted RBP8.82□□□□□ -1
PTPRF-208ENST00000437607 H7BYZ3 331 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 CA1P00915 261 aaPredicted RBP8.82□□□□□ -1
PTPRF-208ENST00000437607 RNASE4P34096 147 aaKnown RBP8.82□□□□□ -1
PTPRF-208ENST00000437607 DEFB135Q30KP9 77 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 Q6AWC8 147 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 FAM231DQ6ZW35 169 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 Q6ZWC4 215 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 OR10G8Q8NGN5 311 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 RNASE7Q9H1E1 156 aaKnown RBP8.82□□□□□ -1
PTPRF-208ENST00000437607 RPP21Q9H633 154 aaKnown RBP8.82□□□□□ -1
PTPRF-208ENST00000437607 RPS10P5Q9NQ39 176 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 OSTCQ9NRP0 149 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 NAGKQ9UJ70 344 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 TP53TG1Q9Y2A0 90 aa8.82□□□□□ -1
PTPRF-208ENST00000437607 AGRNO00468 2067 aa8.81□□□□□ -1
PTPRF-208ENST00000437607 C19orf71A6NCJ1 209 aa8.81□□□□□ -1
PTPRF-208ENST00000437607 FABP5P3A8MUU1 101 aa8.81□□□□□ -1
PTPRF-208ENST00000437607 SPRY2O43597 315 aa8.81□□□□□ -1
PTPRF-208ENST00000437607 GATCO43716 136 aaKnown RBP8.81□□□□□ -1
PTPRF-208ENST00000437607 ZNF80P51504 273 aaPredicted RBP8.81□□□□□ -1
PTPRF-208ENST00000437607 APOC4P55056 127 aa8.81□□□□□ -1
PTPRF-208ENST00000437607 RNF212Q495C1 297 aa8.81□□□□□ -1
PTPRF-208ENST00000437607 ANAPC16Q96DE5 110 aa8.81□□□□□ -1
PTPRF-208ENST00000437607 XCL2Q9UBD3 114 aa8.81□□□□□ -1
PTPRF-208ENST00000437607 TRAV12-3A0A0B4J271 114 aa8.8□□□□□ -1
PTPRF-208ENST00000437607 XKRY2A2RUG3 117 aa8.8□□□□□ -1
PTPRF-208ENST00000437607 C7orf77A4D0Y5 90 aa8.8□□□□□ -1
PTPRF-208ENST00000437607 KIR3DS1Q14943 382 aa8.8□□□□□ -1
PTPRF-208ENST00000437607 OR2D3Q8NGH3 330 aa8.8□□□□□ -1
PTPRF-208ENST00000437607 RNF183Q96D59 192 aa8.8□□□□□ -1
PTPRF-208ENST00000437607 C20orf144Q9BQM9 153 aa8.8□□□□□ -1
PTPRF-208ENST00000437607 CTDSP1Q9GZU7 261 aa8.8□□□□□ -1
PTPRF-208ENST00000437607 A0A087WWC5 75 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 KIR2DL5BA0A0G2JN68 375 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 KIR2DL5BA0A0G2JPC4 375 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 TMEM189A5PLL7 270 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 ORM1P02763 201 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 RPS20P60866 119 aaKnown RBP8.79□□□□□ -1
PTPRF-208ENST00000437607 LINC01559Q495D7 138 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 CT83Q5H943 113 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 KIR2DL5AQ8N109 375 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 TMEM256Q8N2U0 113 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 NUDT10Q8NFP7 164 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 KIR2DL5BQ8NHK3 375 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 NUDT11Q96G61 164 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 TMEM208Q9BTX3 173 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 CSTL1Q9H114 145 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 GOLT1BQ9Y3E0 138 aa8.79□□□□□ -1
PTPRF-208ENST00000437607 CRXO43186 299 aaPredicted RBP8.78□□□□□ -1
PTPRF-208ENST00000437607 CRIP1P50238 77 aa8.78□□□□□ -1
PTPRF-208ENST00000437607 RPL19P84098 196 aaKnown RBP8.78□□□□□ -1
PTPRF-208ENST00000437607 MUC21Q5SSG8 566 aa8.78□□□□□ -1
PTPRF-208ENST00000437607 FAM159AQ6UWV7 190 aa8.78□□□□□ -1
PTPRF-208ENST00000437607 V9GYV3 84 aa8.78□□□□□ -1
PTPRF-208ENST00000437607 DNAH11Q96DT5 4516 aa8.77□□□□□ -1.01
PTPRF-208ENST00000437607 IGHV3OR16-12A0A075B7B8 117 aa8.77□□□□□ -1.01
PTPRF-208ENST00000437607 TMSB15BA0A087X1C1 80 aa8.77□□□□□ -1.01
PTPRF-208ENST00000437607 A8MWL6 223 aa8.77□□□□□ -1.01
PTPRF-208ENST00000437607 UBE2CO00762 179 aa8.77□□□□□ -1.01
PTPRF-208ENST00000437607 KCNIP4Q6PIL6 250 aa8.77□□□□□ -1.01
PTPRF-208ENST00000437607 ATRAIDQ6UW56 229 aa8.77□□□□□ -1.01
PTPRF-208ENST00000437607 PHLDA1Q8WV24 401 aaPredicted RBP8.77□□□□□ -1.01
PTPRF-208ENST00000437607 KCNS1Q96KK3 526 aa8.77□□□□□ -1.01
PTPRF-208ENST00000437607 KLK5Q9Y337 293 aaPredicted RBP8.77□□□□□ -1.01
PTPRF-208ENST00000437607 TRGV11A0A075B6L2 103 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 IGHV1OR15-1A0A075B7D0 117 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 CXCL1P09341 107 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 RBMY1A1P0DJD3 496 aaKnown RBP8.76□□□□□ -1.01
PTPRF-208ENST00000437607 RBMY1CP0DJD4 496 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 S100PP25815 95 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 S100A4P26447 101 aaKnown RBP8.76□□□□□ -1.01
PTPRF-208ENST00000437607 ASIPP42127 132 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 RBMY1FQ15415 496 aaKnown RBP8.76□□□□□ -1.01
PTPRF-208ENST00000437607 ANXA2RQ3ZCQ2 193 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 LGALS9CQ6DKI2 356 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 TSKUQ8WUA8 353 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 LINC01587Q99440 93 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 PYGO2Q9BRQ0 406 aa8.76□□□□□ -1.01
PTPRF-208ENST00000437607 IGKV3D-20A0A0C4DH25 116 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms