RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 SERP2Q8N6R1 65 aa2.69□□□□□ -1.98
SYNE1-212ENST00000423061 LRCOL1A6NCL2 159 aa2.69□□□□□ -1.98
SYNE1-212ENST00000423061 IGHV3-66A0A0C4DH42 116 aa2.69□□□□□ -1.98
SYNE1-212ENST00000423061 IGHV3-72A0A0B4J1Y9 119 aa2.69□□□□□ -1.98
SYNE1-212ENST00000423061 DUTP33316 252 aaKnown RBP2.69□□□□□ -1.98
SYNE1-212ENST00000423061 Q8N8P6 123 aa2.69□□□□□ -1.98
SYNE1-212ENST00000423061 ZNF497Q6ZNH5 498 aa2.69□□□□□ -1.98
SYNE1-212ENST00000423061 Q8TAT8 98 aa2.69□□□□□ -1.98
SYNE1-212ENST00000423061 IGHV3-49A0A0A0MS15 119 aa2.69□□□□□ -1.98
SYNE1-212ENST00000423061 RSPO1Q2MKA7 263 aaPredicted RBP2.69□□□□□ -1.98
SYNE1-212ENST00000423061 PEMTQ9UBM1 199 aa2.69□□□□□ -1.98
SYNE1-212ENST00000423061 TRGV8A0A0C4DH27 118 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 MUSTN1Q8IVN3 82 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 C8orf49Q96NF6 230 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 IGFL4Q6B9Z1 124 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 CD28P10747 220 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 ZNF134P52741 427 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 MDFICQ9P1T7 246 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 CRYGSP22914 178 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 IGLV3-32A0A0A0MS00 114 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 A0A1B0GXF2 115 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 DAD1P61803 113 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 DAZ4Q86SG3 579 aaKnown RBP2.68□□□□□ -1.98
SYNE1-212ENST00000423061 DAZ1Q9NQZ3 744 aaKnown RBP2.68□□□□□ -1.98
SYNE1-212ENST00000423061 TRAV23DV6A0A075B6W5 121 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 COX7CP15954 63 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 NDUFC2-KCTD14E9PQ53 114 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 FAM223AQ8IWN6 122 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 ZNF883P0CG24 379 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 MNX1P50219 401 aaPredicted RBP2.68□□□□□ -1.98
SYNE1-212ENST00000423061 SLC50A1Q9BRV3 221 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 TDHQ8IZJ6 230 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 MSRB1Q9NZV6 116 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 CCL13Q99616 98 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 MOB4Q9Y3A3 225 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 M0R381 172 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 PRORYQ9H606 182 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 KNCNA6PVL3 124 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 ELANEP08246 267 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 PMAIP1Q13794 54 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 ZCCHC24Q8N2G6 241 aaKnown RBP2.68□□□□□ -1.98
SYNE1-212ENST00000423061 CD177Q8N6Q3 437 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 FAM167A-AS1Q96KT0 104 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 SPG11Q96JI7 2443 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 H7C423 109 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 IGHV3OR16-8A0A075B7F1 116 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 GHRHP01286 108 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 TMEM200BQ69YZ2 307 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 C5orf67F2Z3F1 127 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 H3BT86 120 aa2.68□□□□□ -1.98
SYNE1-212ENST00000423061 GFRA4Q9GZZ7 299 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 TPSG1Q9NRR2 321 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.67□□□□□ -1.98
SYNE1-212ENST00000423061 FAM223BA6NKX1 122 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 CD69Q07108 199 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 RNASE4P34096 147 aaKnown RBP2.67□□□□□ -1.98
SYNE1-212ENST00000423061 SERP1Q9Y6X1 66 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 S4R3C0 116 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 LINC00473A8K010 186 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 M0R1W7 72 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 MLST8Q9BVC4 326 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 A0A087WZ39 114 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 J3QQQ9 107 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 PRCDQ00LT1 54 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 PRR25Q96S07 402 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 KIAA1549Q9HCM3 1950 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 Q6ZS49 121 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 SUMO2P61956 95 aaKnown RBP2.67□□□□□ -1.98
SYNE1-212ENST00000423061 C2orf48Q96LS8 159 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 EML5Q05BV3 1969 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 TRBV7-1A0A0A6YYK4 115 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 SPINK14Q6IE38 97 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 KLF14Q8TD94 323 aaPredicted RBP2.67□□□□□ -1.98
SYNE1-212ENST00000423061 IGHV3-35A0A0C4DH35 117 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 UBE2L6O14933 153 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 Q6Q795 121 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 PCOLCEQ15113 449 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 SERTAD4-AS1Q5TG53 156 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 RPP25Q9BUL9 199 aaKnown RBP2.67□□□□□ -1.98
SYNE1-212ENST00000423061 SNRPD3P62318 126 aaKnown RBP2.67□□□□□ -1.98
SYNE1-212ENST00000423061 WFDC9Q8NEX5 89 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 OVOL2Q9BRP0 275 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 TIMM17BO60830 172 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 HOXD3P31249 432 aaPredicted RBP2.67□□□□□ -1.98
SYNE1-212ENST00000423061 CT83Q5H943 113 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 GAS8-AS1O95177 125 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 FAM216BQ8N7L0 139 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 Q71RC1 249 aaPredicted RBP2.67□□□□□ -1.98
SYNE1-212ENST00000423061 TEX36Q5VZQ5 186 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 SOSTDC1Q6X4U4 206 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 FXYD5Q96DB9 178 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 PTPRQQ9UMZ3 2332 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 TRBV19A0A075B6N1 114 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 TMEM86BQ8N661 226 aa2.67□□□□□ -1.98
SYNE1-212ENST00000423061 FANCD2OSQ96PS1 177 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 TMEM133Q9H2Q1 129 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 TRBV7-3A0A075B6L6 115 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 GP9P14770 177 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 IGHV3OR16-13A0A075B7E8 117 aa2.66□□□□□ -1.98
SYNE1-212ENST00000423061 IGHV3-74A0A0B4J1X5 117 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms