RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 C11orf72Q8NBR9 251 aa12.18□□□□□ -0.46
COL7A1-202ENST00000422991 KCNS1Q96KK3 526 aa12.18□□□□□ -0.46
COL7A1-202ENST00000422991 TRGV11A0A075B6L2 103 aa12.17□□□□□ -0.46
COL7A1-202ENST00000422991 ZNF727A8MUV8 499 aa12.17□□□□□ -0.46
COL7A1-202ENST00000422991 MGST1P10620 155 aaKnown RBP12.17□□□□□ -0.46
COL7A1-202ENST00000422991 IBA57Q5T440 356 aaKnown RBP12.17□□□□□ -0.46
COL7A1-202ENST00000422991 PRR27Q6MZM9 219 aa12.17□□□□□ -0.46
COL7A1-202ENST00000422991 IL17DQ8TAD2 202 aa12.17□□□□□ -0.46
COL7A1-202ENST00000422991 SDF2L1Q9HCN8 221 aa12.17□□□□□ -0.46
COL7A1-202ENST00000422991 CELA1Q9UNI1 258 aa12.17□□□□□ -0.46
COL7A1-202ENST00000422991 LINC00862A6NCI5 91 aa12.16□□□□□ -0.46
COL7A1-202ENST00000422991 TYMSP04818 313 aa12.16□□□□□ -0.46
COL7A1-202ENST00000422991 OCC1Q8TAD7 63 aa12.16□□□□□ -0.46
COL7A1-202ENST00000422991 LY96Q9Y6Y9 160 aa12.16□□□□□ -0.46
COL7A1-202ENST00000422991 IGKV3D-20A0A0C4DH25 116 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 KRBOX1C9JBD0 128 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 K7EN84 100 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 ORM1P02763 201 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 TCL1AP56279 114 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 ZNF415Q09FC8 603 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 LINC01559Q495D7 138 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 FAM74A3Q4VXF1 159 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 FAM222AQ5U5X8 452 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 COMMD7Q86VX2 200 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 BIN3Q9NQY0 253 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 GSN-AS1Q9NRJ2 163 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 DKK2Q9UBU2 259 aa12.15□□□□□ -0.46
COL7A1-202ENST00000422991 TIMM8BQ9Y5J9 83 aaPredicted RBP12.15□□□□□ -0.46
COL7A1-202ENST00000422991 IGHV3-16A0A0C4DH30 117 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 TEX48A0A1B0GUV7 120 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 C19orf71A6NCJ1 209 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 SNURFLB1AK76 121 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 B4DEV8 164 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 M0R036 132 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 GNRH2O43555 120 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 OR5I1Q13606 314 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 SOHLH1Q5JUK2 328 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 UQCC3Q6UW78 93 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 MDFICQ9P1T7 246 aa12.14□□□□□ -0.47
COL7A1-202ENST00000422991 LYRM9A8MSI8 78 aa12.13□□□□□ -0.47
COL7A1-202ENST00000422991 SFTA3P0C7M3 94 aa12.13□□□□□ -0.47
COL7A1-202ENST00000422991 SPART-AS1P0CW21 52 aa12.13□□□□□ -0.47
COL7A1-202ENST00000422991 DAZ2Q13117 558 aaKnown RBP12.13□□□□□ -0.47
COL7A1-202ENST00000422991 NOP10Q9NPE3 64 aaKnown RBP12.13□□□□□ -0.47
COL7A1-202ENST00000422991 CXorf65A6NEN9 183 aa12.12□□□□□ -0.47
COL7A1-202ENST00000422991 LINC01551Q86U37 167 aa12.12□□□□□ -0.47
COL7A1-202ENST00000422991 ZNF575Q86XF7 245 aa12.12□□□□□ -0.47
COL7A1-202ENST00000422991 C11orf45Q8TAV5 145 aa12.12□□□□□ -0.47
COL7A1-202ENST00000422991 TMSB15BA0A087X1C1 80 aa12.11□□□□□ -0.47
COL7A1-202ENST00000422991 ASIPP42127 132 aa12.11□□□□□ -0.47
COL7A1-202ENST00000422991 NANOS2P60321 138 aaKnown RBP12.11□□□□□ -0.47
COL7A1-202ENST00000422991 RPL19P84098 196 aaKnown RBP12.11□□□□□ -0.47
COL7A1-202ENST00000422991 TMEM241Q24JQ0 296 aa12.11□□□□□ -0.47
COL7A1-202ENST00000422991 DNLZQ5SXM8 178 aa12.11□□□□□ -0.47
COL7A1-202ENST00000422991 DAZAP1Q96EP5 407 aaKnown RBP12.11□□□□□ -0.47
COL7A1-202ENST00000422991 NAT8Q9UHE5 227 aa12.11□□□□□ -0.47
COL7A1-202ENST00000422991 P01737 135 aa12.1□□□□□ -0.47
COL7A1-202ENST00000422991 CXCL1P09341 107 aa12.1□□□□□ -0.47
COL7A1-202ENST00000422991 RNASE3P12724 160 aaKnown RBP12.1□□□□□ -0.47
COL7A1-202ENST00000422991 C12orf74Q32Q52 190 aa12.1□□□□□ -0.47
COL7A1-202ENST00000422991 LINC00612Q8N6U2 182 aa12.1□□□□□ -0.47
COL7A1-202ENST00000422991 C9orf85Q96MD7 179 aa12.1□□□□□ -0.47
COL7A1-202ENST00000422991 SPXQ9BT56 116 aa12.1□□□□□ -0.47
COL7A1-202ENST00000422991 RNASE7Q9H1E1 156 aaKnown RBP12.1□□□□□ -0.47
COL7A1-202ENST00000422991 CSMD3Q7Z407 3707 aa12.09□□□□□ -0.47
COL7A1-202ENST00000422991 GRIFINA4D1Z8 144 aa12.09□□□□□ -0.47
COL7A1-202ENST00000422991 C3orf84H3BNL1 204 aa12.09□□□□□ -0.47
COL7A1-202ENST00000422991 SPINK4O60575 86 aa12.09□□□□□ -0.47
COL7A1-202ENST00000422991 RPL23P62829 140 aaKnown RBP12.09□□□□□ -0.47
COL7A1-202ENST00000422991 Q6ZTI0 123 aa12.09□□□□□ -0.47
COL7A1-202ENST00000422991 NUDT10Q8NFP7 164 aa12.09□□□□□ -0.47
COL7A1-202ENST00000422991 NUDT11Q96G61 164 aa12.09□□□□□ -0.47
COL7A1-202ENST00000422991 H3BVH4 76 aa12.08□□□□□ -0.48
COL7A1-202ENST00000422991 DAD1P61803 113 aa12.08□□□□□ -0.48
COL7A1-202ENST00000422991 FAM231DQ6ZW35 169 aa12.08□□□□□ -0.48
COL7A1-202ENST00000422991 OR2D3Q8NGH3 330 aa12.08□□□□□ -0.48
COL7A1-202ENST00000422991 KMT2CQ8NEZ4 4911 aaKnown RBP12.08□□□□□ -0.48
COL7A1-202ENST00000422991 MUC4Q99102 2169 aa12.08□□□□□ -0.48
COL7A1-202ENST00000422991 TRGV1A0A0A0MS02 117 aa12.07□□□□□ -0.48
COL7A1-202ENST00000422991 DEFB130BP0DP73 79 aa12.07□□□□□ -0.48
COL7A1-202ENST00000422991 DEFB130AP0DP74 79 aa12.07□□□□□ -0.48
COL7A1-202ENST00000422991 S100A4P26447 101 aaKnown RBP12.07□□□□□ -0.48
COL7A1-202ENST00000422991 ADIRFQ15847 76 aa12.07□□□□□ -0.48
COL7A1-202ENST00000422991 LGALS9BQ3B8N2 356 aa12.07□□□□□ -0.48
COL7A1-202ENST00000422991 Q6ZTC4 211 aa12.07□□□□□ -0.48
COL7A1-202ENST00000422991 MUC7Q8TAX7 377 aa12.07□□□□□ -0.48
COL7A1-202ENST00000422991 ISOC2Q96AB3 205 aa12.07□□□□□ -0.48
COL7A1-202ENST00000422991 RPP21Q9H633 154 aaKnown RBP12.07□□□□□ -0.48
COL7A1-202ENST00000422991 MRPL16Q9NX20 251 aaKnown RBP12.07□□□□□ -0.48
COL7A1-202ENST00000422991 IL36BQ9NZH7 164 aa12.07□□□□□ -0.48
COL7A1-202ENST00000422991 GAGE12BA1L429 117 aa12.06□□□□□ -0.48
COL7A1-202ENST00000422991 TMEM218A2RU14 115 aa12.06□□□□□ -0.48
COL7A1-202ENST00000422991 M0R2P5 195 aa12.06□□□□□ -0.48
COL7A1-202ENST00000422991 GAGE7O76087 117 aa12.06□□□□□ -0.48
COL7A1-202ENST00000422991 GAGE12FP0CL80 117 aa12.06□□□□□ -0.48
COL7A1-202ENST00000422991 GAGE12GP0CL81 117 aa12.06□□□□□ -0.48
COL7A1-202ENST00000422991 GAGE12IP0CL82 117 aa12.06□□□□□ -0.48
COL7A1-202ENST00000422991 MED14OSP0DP75 135 aa12.06□□□□□ -0.48
COL7A1-202ENST00000422991 RPS20P60866 119 aaKnown RBP12.06□□□□□ -0.48
COL7A1-202ENST00000422991 ARMS2P0C7Q2 107 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms