RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 M0R2P5 195 aa7.8□□□□□ -1.16
USP4-204ENST00000416417 CRYGDP07320 174 aa7.8□□□□□ -1.16
USP4-204ENST00000416417 EVI2AP22794 236 aa7.8□□□□□ -1.16
USP4-204ENST00000416417 NFE4Q86UQ8 179 aa7.8□□□□□ -1.16
USP4-204ENST00000416417 NHLRC2Q8NBF2 726 aa7.8□□□□□ -1.16
USP4-204ENST00000416417 TREM1Q9NP99 234 aa7.8□□□□□ -1.16
USP4-204ENST00000416417 LENEPQ9Y5L5 61 aa7.8□□□□□ -1.16
USP4-204ENST00000416417 A0A1W2PPV4 95 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 ORM1P02763 201 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 INAFM2P0DMQ5 153 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 ZNF80P51504 273 aaPredicted RBP7.79□□□□□ -1.16
USP4-204ENST00000416417 TDRG1Q3Y452 100 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 Q5VSD8 79 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 DPPA3Q6W0C5 159 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 LINC00299Q6ZSB3 139 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 TMEM75Q8N9X5 138 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 MARVELD1Q9BSK0 173 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 PTTG2Q9NZH5 202 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 C11orf21Q9P2W6 132 aa7.79□□□□□ -1.16
USP4-204ENST00000416417 TRAV21A0A0B4J279 112 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 ACOT6Q3I5F7 207 aaPredicted RBP7.78□□□□□ -1.16
USP4-204ENST00000416417 CDPF1Q6NVV7 123 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 OR10G9Q8NGN4 311 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 OR10G7Q8NGN6 311 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 TXNDC17Q9BRA2 123 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 Q9HAA7 133 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 SDF2L1Q9HCN8 221 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 IGHV3-30P01768 117 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 IGHV3-33P01772 117 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 PET100P0DJ07 73 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 ARL14EPLP0DKL9 152 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 IGHV3-30-3P0DP02 117 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 IGHV3-30-5P0DP03 117 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 GATA1P15976 413 aaPredicted RBP7.78□□□□□ -1.16
USP4-204ENST00000416417 PPT1P50897 306 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 FAM74A1Q5RGS3 127 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 TMED6Q8WW62 240 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 ASB13Q8WXK3 278 aa7.78□□□□□ -1.16
USP4-204ENST00000416417 GCSHP23434 173 aa7.77□□□□□ -1.17
USP4-204ENST00000416417 PQLC2Q6ZP29 291 aa7.77□□□□□ -1.17
USP4-204ENST00000416417 SLC25A29Q8N8R3 303 aa7.77□□□□□ -1.17
USP4-204ENST00000416417 HSD17B11Q8NBQ5 300 aa7.77□□□□□ -1.17
USP4-204ENST00000416417 IGHV3-38A0A0C4DH36 116 aa7.76□□□□□ -1.17
USP4-204ENST00000416417 FBLL1A6NHQ2 334 aaKnown RBP7.76□□□□□ -1.17
USP4-204ENST00000416417 A6NHS1 94 aa7.76□□□□□ -1.17
USP4-204ENST00000416417 PSCAO43653 123 aa7.76□□□□□ -1.17
USP4-204ENST00000416417 ZNF876PQ49A33 203 aa7.76□□□□□ -1.17
USP4-204ENST00000416417 CFAP126Q5VTH2 177 aa7.76□□□□□ -1.17
USP4-204ENST00000416417 Q8N3U1 123 aa7.76□□□□□ -1.17
USP4-204ENST00000416417 LRCOL1A6NCL2 159 aa7.75□□□□□ -1.17
USP4-204ENST00000416417 PGPEP1LA6NFU8 196 aa7.75□□□□□ -1.17
USP4-204ENST00000416417 RS1O15537 224 aa7.75□□□□□ -1.17
USP4-204ENST00000416417 GCGP01275 180 aa7.75□□□□□ -1.17
USP4-204ENST00000416417 CDC34P49427 236 aaPredicted RBP7.75□□□□□ -1.17
USP4-204ENST00000416417 OR10J3Q5JRS4 329 aa7.75□□□□□ -1.17
USP4-204ENST00000416417 FRZBQ92765 325 aa7.75□□□□□ -1.17
USP4-204ENST00000416417 PSG8Q9UQ74 426 aa7.75□□□□□ -1.17
USP4-204ENST00000416417 IGLV5-52A0A0A0MRZ9 124 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 TCRAP04437 139 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 GCHFRP30047 84 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 ZNF506Q5JVG8 444 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 Q6ZSN1 163 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 PRNTQ86SH4 94 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 RAB24Q969Q5 203 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 KCNS1Q96KK3 526 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 SH3BGRL3Q9H299 93 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 ALG5Q9Y673 324 aa7.74□□□□□ -1.17
USP4-204ENST00000416417 TRAV34A0A0B4J273 112 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 IBA57-AS1B1ANH7 110 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 GGTLC3B5MD39 225 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 IGLV2-11P01706 119 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 STAG3L2P0CL84 134 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 STAG3L3P0CL85 134 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 DEFA1P59665 94 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 DEFA3P59666 94 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 SUMO1P63165 101 aaKnown RBP7.73□□□□□ -1.17
USP4-204ENST00000416417 LINC01556Q5JQF7 62 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 C10orf126Q8N4M7 172 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 LINC00479Q96M42 142 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 C9orf85Q96MD7 179 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 NDFIP1Q9BT67 221 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 Q9UF83 564 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 VPS13BQ7Z7G8 4022 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 TRAV8-6A0A0B4J262 113 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 RNASE3P12724 160 aaKnown RBP7.73□□□□□ -1.17
USP4-204ENST00000416417 ATP6V0CP27449 155 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 WFDC2Q14508 124 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 Q5BKY6 102 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 ARL6IP6Q8N6S5 226 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 C5orf17Q8NAS9 161 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 PRADC1Q9BSG0 188 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 JPT2Q9H910 190 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 FAM30AQ9NZY2 134 aa7.73□□□□□ -1.17
USP4-204ENST00000416417 GAGE12JA6NER3 117 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 K7EP13 123 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 TAAR5O14804 337 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 LECT2O14960 151 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 PFN1P07737 140 aaKnown RBP7.72□□□□□ -1.17
USP4-204ENST00000416417 TIRAPP58753 221 aa7.72□□□□□ -1.17
USP4-204ENST00000416417 FLI1Q01543 452 aaPredicted RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms