RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CDIP1Q9H305 208 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 TRBV19A0A075B6N1 114 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 IGHV4-61A0A0C4DH41 118 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 A0A1B0GWB2 263 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 AMTNQ6UX39 209 aa8.66□□□□□ -1.02
CUX1-204ENST00000393824 MT-ATP8P03928 68 aa8.65□□□□□ -1.02
CUX1-204ENST00000393824 RPL27AP46776 148 aaKnown RBP8.65□□□□□ -1.02
CUX1-204ENST00000393824 LMO4P61968 165 aa8.65□□□□□ -1.02
CUX1-204ENST00000393824 WFDC3Q8IUB2 231 aa8.65□□□□□ -1.02
CUX1-204ENST00000393824 TIMD4Q96H15 378 aa8.65□□□□□ -1.02
CUX1-204ENST00000393824 ATP5LO75964 103 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 DPM2O94777 84 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 APOMO95445 188 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 ID1P41134 155 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 DLX6P56179 175 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 TMEM155Q4W5P6 130 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 ZC2HC1BQ5TFG8 222 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 HCP5Q6MZN7 132 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 SIGLEC15Q6ZMC9 328 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 MAPK1IP1LQ8NDC0 245 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 C10orf105Q8TEF2 133 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 MXRA5Q9NR99 2828 aa8.65□□□□□ -1.03
CUX1-204ENST00000393824 LINC01619G3V211 115 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 CRYGBP07316 175 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 PRSS1P07477 247 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 COX8CQ7Z4L0 72 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 GTSCR1Q86UQ5 136 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 CITED1Q99966 193 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 C1QTNF4Q9BXJ3 329 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 MAP1LC3AQ9H492 121 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 LEPP41159 167 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 LYZP61626 148 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 TWIST1Q15672 202 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 SYT8Q8NBV8 401 aa8.64□□□□□ -1.03
CUX1-204ENST00000393824 NXT2Q9NPJ8 142 aaKnown RBP8.64□□□□□ -1.03
CUX1-204ENST00000393824 BAHCC1Q9P281 2608 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 SMKR1H3BMG3 65 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 K7EMI3 77 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 Q6ZUT4 128 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 KRTAP1-3Q8IUG1 177 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 MAPKAPK5-AS1Q8N8E1 139 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 TMEM158Q8WZ71 300 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 ASCL2Q99929 193 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 SRSF8Q9BRL6 282 aaKnown RBP8.63□□□□□ -1.03
CUX1-204ENST00000393824 SONP18583 2426 aaKnown RBP8.63□□□□□ -1.03
CUX1-204ENST00000393824 CFAP126Q5VTH2 177 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 C17orf77Q96MU5 243 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 C8orf49Q96NF6 230 aa8.63□□□□□ -1.03
CUX1-204ENST00000393824 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.62□□□□□ -1.033e-7■■■■■ 26.8
CUX1-204ENST00000393824 TRBV7-3A0A075B6L6 115 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 FOXC2Q99958 501 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 SHANK2-AS3Q9BTD1 123 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 TMEM133Q9H2Q1 129 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 TPSG1Q9NRR2 321 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 ABCA1O95477 2261 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 SH2D1AO60880 128 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 XGP55808 180 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 DIAPH2-AS1Q14236 149 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 DEFB113Q30KQ7 82 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 RNF185Q96GF1 192 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 SIGLEC9Q9Y336 463 aa8.62□□□□□ -1.03
CUX1-204ENST00000393824 A0A096LNT2 108 aa8.61□□□□□ -1.03
CUX1-204ENST00000393824 IGLC6P0CF74 106 aa8.61□□□□□ -1.03
CUX1-204ENST00000393824 PF4V1P10720 104 aa8.61□□□□□ -1.03
CUX1-204ENST00000393824 SMCPP49901 116 aaPredicted RBP8.61□□□□□ -1.03
CUX1-204ENST00000393824 LY6G5BQ8NDX9 201 aa8.61□□□□□ -1.03
CUX1-204ENST00000393824 HIST1H4GQ99525 98 aa8.61□□□□□ -1.03
CUX1-204ENST00000393824 TMSB15BA0A087X1C1 80 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 IGHV3-21A0A0B4J1V1 117 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 TRAV40A0A0B4J280 105 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 H3BRN7 92 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 I3L2K1 104 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 MRPS12O15235 138 aaKnown RBP8.6□□□□□ -1.03
CUX1-204ENST00000393824 MORN3Q6PF18 240 aaPredicted RBP8.6□□□□□ -1.03
CUX1-204ENST00000393824 NFE4Q86UQ8 179 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 RNF5Q99942 180 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 RASL11BQ9BPW5 248 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 CNFNQ9BYD5 112 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 VCX2Q9H322 139 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 ONECUT1Q9UBC0 465 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 AGRNO00468 2067 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 TEX22C9J3V5 150 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 ENSAO43768 121 aaKnown RBP8.6□□□□□ -1.03
CUX1-204ENST00000393824 TNFRSF6BO95407 300 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 IGHV1-8P0DP01 117 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 PDE6HQ13956 83 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 ZFAND6Q6FIF0 208 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 PIMREGQ9BSJ6 248 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 TMEM160Q9NX00 188 aa8.6□□□□□ -1.03
CUX1-204ENST00000393824 M0R3E3 92 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 IGKV1-17P01599 117 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 FHL3Q13643 280 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 PLGLAQ15195 96 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 DLX4Q92988 240 aaPredicted RBP8.59□□□□□ -1.03
CUX1-204ENST00000393824 MRPL35Q9NZE8 188 aaKnown RBP8.59□□□□□ -1.03
CUX1-204ENST00000393824 GAGE12JA6NER3 117 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 PLXNB1O43157 2135 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 HOXA3O43365 443 aaPredicted RBP8.59□□□□□ -1.03
CUX1-204ENST00000393824 GAGE7O76087 117 aa8.59□□□□□ -1.03
CUX1-204ENST00000393824 NHLRC4P0CG21 123 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 221.7 ms