RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 APOC4P55056 127 aa12.88□□□□□ -0.35
SCN3B-202ENST00000392770 FREM1Q5H8C1 2179 aa12.88□□□□□ -0.35
SCN3B-202ENST00000392770 IGHV4OR15-8A0A075B7B6 117 aa12.87□□□□□ -0.35
SCN3B-202ENST00000392770 A0A087WW49 117 aa12.87□□□□□ -0.35
SCN3B-202ENST00000392770 EIF4EBP1Q13541 118 aaPredicted RBP12.87□□□□□ -0.35
SCN3B-202ENST00000392770 MPV17L2Q567V2 206 aa12.87□□□□□ -0.35
SCN3B-202ENST00000392770 CACNA1GO43497 2377 aa12.87□□□□□ -0.35
SCN3B-202ENST00000392770 LMO4P61968 165 aa12.87□□□□□ -0.35
SCN3B-202ENST00000392770 M0R2P5 195 aa12.87□□□□□ -0.35
SCN3B-202ENST00000392770 ESDP10768 282 aa12.87□□□□□ -0.35
SCN3B-202ENST00000392770 APRG1Q8IVJ8 170 aa12.86□□□□□ -0.35
SCN3B-202ENST00000392770 ZNRF2Q8NHG8 242 aa12.86□□□□□ -0.35
SCN3B-202ENST00000392770 NAA38Q9BRA0 125 aaKnown RBP12.86□□□□□ -0.35
SCN3B-202ENST00000392770 F5H768 121 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 TMEM86BQ8N661 226 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 PYGO2Q9BRQ0 406 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 CHAC1Q9BUX1 264 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 ERG28Q9UKR5 140 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 A6NDX4 124 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 SS18Q15532 418 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 LENEPQ9Y5L5 61 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 MALRD1Q5VYJ5 2156 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 TRBV25-1A0A075B6N4 114 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 IGHG2P01859 326 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 NCOA6Q14686 2063 aaPredicted RBP12.85□□□□□ -0.35
SCN3B-202ENST00000392770 PMVKQ15126 192 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 SMIM2Q9BVW6 85 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 PCNX1Q96RV3 2341 aa12.85□□□□□ -0.35
SCN3B-202ENST00000392770 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.84□□□□□ -0.35
SCN3B-202ENST00000392770 TSPAN13O95857 204 aa12.84□□□□□ -0.35
SCN3B-202ENST00000392770 SPRY2O43597 315 aa12.84□□□□□ -0.35
SCN3B-202ENST00000392770 MAJINQ3KP22 176 aa12.83□□□□□ -0.35
SCN3B-202ENST00000392770 MYMXA0A1B0GTQ4 84 aa12.83□□□□□ -0.36
SCN3B-202ENST00000392770 ZNF124Q15973 351 aa12.83□□□□□ -0.36
SCN3B-202ENST00000392770 KLF5Q13887 457 aaPredicted RBP12.83□□□□□ -0.36
SCN3B-202ENST00000392770 C11orf71Q6IPW1 123 aa12.83□□□□□ -0.36
SCN3B-202ENST00000392770 FANCD2OSQ96PS1 177 aa12.83□□□□□ -0.36
SCN3B-202ENST00000392770 ZNF295-AS1Q8N0V1 137 aa12.83□□□□□ -0.36
SCN3B-202ENST00000392770 COL5A1P20908 1838 aaPredicted RBP12.83□□□□□ -0.36
SCN3B-202ENST00000392770 IGKV1D-37A0A075B6S9 117 aa12.82□□□□□ -0.36
SCN3B-202ENST00000392770 PRAC2D3DTV9 90 aa12.82□□□□□ -0.36
SCN3B-202ENST00000392770 C6orf226Q5I0X4 101 aa12.82□□□□□ -0.36
SCN3B-202ENST00000392770 C20orf78Q9BR46 151 aa12.82□□□□□ -0.36
SCN3B-202ENST00000392770 FSTL3O95633 263 aa12.82□□□□□ -0.36
SCN3B-202ENST00000392770 SRSF2Q01130 221 aaKnown RBP12.82□□□□□ -0.36
SCN3B-202ENST00000392770 TRBV12-3P01733 135 aa12.82□□□□□ -0.36
SCN3B-202ENST00000392770 C20orf144Q9BQM9 153 aa12.81□□□□□ -0.36
SCN3B-202ENST00000392770 MUC6Q6W4X9 2439 aa12.81□□□□□ -0.36
SCN3B-202ENST00000392770 ZNF48Q96MX3 618 aaPredicted RBP12.81□□□□□ -0.36
SCN3B-202ENST00000392770 SLC25A20O43772 301 aa12.81□□□□□ -0.36
SCN3B-202ENST00000392770 KIR3DS1Q14943 382 aa12.81□□□□□ -0.36
SCN3B-202ENST00000392770 S100A7L2Q5SY68 101 aa12.81□□□□□ -0.36
SCN3B-202ENST00000392770 NOP10Q9NPE3 64 aaKnown RBP12.81□□□□□ -0.36
SCN3B-202ENST00000392770 MRPL52Q86TS9 123 aaKnown RBP12.8□□□□□ -0.36
SCN3B-202ENST00000392770 SPAG8Q99932 426 aaPredicted RBP12.8□□□□□ -0.36
SCN3B-202ENST00000392770 MED12LQ86YW9 2145 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 LOXL1Q08397 574 aaPredicted RBP12.8□□□□□ -0.36
SCN3B-202ENST00000392770 LGALS9BQ3B8N2 356 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 LGALS9CQ6DKI2 356 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 C10orf126Q8N4M7 172 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 PAX4O43316 350 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 C4orf3Q8WVX3 66 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 C2orf70A6NJV1 201 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 PRIMA1Q86XR5 153 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 TMEM243Q9BU79 118 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 U3KQE9 123 aa12.8□□□□□ -0.36
SCN3B-202ENST00000392770 SPTBN1Q01082 2364 aaKnown RBP12.8□□□□□ -0.36
SCN3B-202ENST00000392770 HLA-DRB4P13762 266 aa12.79□□□□□ -0.36
SCN3B-202ENST00000392770 GAGE6Q13070 117 aa12.79□□□□□ -0.36
SCN3B-202ENST00000392770 HLA-DRB4X5D2U9 266 aa12.79□□□□□ -0.36
SCN3B-202ENST00000392770 LINC01548A6NM66 108 aa12.79□□□□□ -0.36
SCN3B-202ENST00000392770 IGLC2P0DOY2 106 aa12.79□□□□□ -0.36
SCN3B-202ENST00000392770 TMEM89A2RUT3 159 aa12.79□□□□□ -0.36
SCN3B-202ENST00000392770 TNFRSF13BO14836 293 aaPredicted RBP12.79□□□□□ -0.36
SCN3B-202ENST00000392770 K7EMT4 169 aa12.79□□□□□ -0.36
SCN3B-202ENST00000392770 KLF12Q9Y4X4 402 aa12.78□□□□□ -0.36
SCN3B-202ENST00000392770 EREGO14944 169 aa12.78□□□□□ -0.36
SCN3B-202ENST00000392770 UNQ9165/PRO28630Q6UXU0 137 aa12.78□□□□□ -0.36
SCN3B-202ENST00000392770 LRRC75A-AS1Q8N1F1 130 aa12.78□□□□□ -0.36
SCN3B-202ENST00000392770 ZNF503Q96F45 646 aa12.78□□□□□ -0.36
SCN3B-202ENST00000392770 GATA1P15976 413 aaPredicted RBP12.78□□□□□ -0.36
SCN3B-202ENST00000392770 GPHB5Q86YW7 130 aa12.78□□□□□ -0.36
SCN3B-202ENST00000392770 ZNF843Q8N446 348 aa12.78□□□□□ -0.36
SCN3B-202ENST00000392770 C9orf47Q6ZRZ4 202 aa12.78□□□□□ -0.36
SCN3B-202ENST00000392770 CCDC140Q96MF4 163 aa12.78□□□□□ -0.36
SCN3B-202ENST00000392770 GTSF1Q8WW33 167 aa12.77□□□□□ -0.36
SCN3B-202ENST00000392770 MRPL35Q9NZE8 188 aaKnown RBP12.77□□□□□ -0.36
SCN3B-202ENST00000392770 LY6LH3BQJ8 138 aa12.77□□□□□ -0.37
SCN3B-202ENST00000392770 LEPROTO15243 131 aa12.77□□□□□ -0.37
SCN3B-202ENST00000392770 C9orf66Q5T8R8 295 aa12.77□□□□□ -0.37
SCN3B-202ENST00000392770 CRYGBP07316 175 aa12.76□□□□□ -0.37
SCN3B-202ENST00000392770 IGHV4-31P0DP07 118 aa12.76□□□□□ -0.37
SCN3B-202ENST00000392770 SHANK1Q9Y566 2161 aa12.76□□□□□ -0.37
SCN3B-202ENST00000392770 WNK2Q9Y3S1 2297 aa12.76□□□□□ -0.37
SCN3B-202ENST00000392770 A0A096LPF7 62 aa12.76□□□□□ -0.37
SCN3B-202ENST00000392770 TRAV8-2A0A0B4J237 113 aa12.76□□□□□ -0.37
SCN3B-202ENST00000392770 MEGF9Q9H1U4 602 aa12.76□□□□□ -0.37
SCN3B-202ENST00000392770 IGLL1P15814 213 aa12.76□□□□□ -0.37
SCN3B-202ENST00000392770 MSRB1Q9NZV6 116 aa12.76□□□□□ -0.37
SCN3B-202ENST00000392770 NBASA2RRP1 2371 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms